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-/* This file is part of the Gudhi Library. The Gudhi library
- * (Geometric Understanding in Higher Dimensions) is a generic C++
- * library for computational topology.
- *
- * Author(s): David Salinas
- *
- * Copyright (C) 2014 Inria
- *
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- *
- */
-
-#ifndef UTILS_K_NEAREST_BUILDER_H_
-#define UTILS_K_NEAREST_BUILDER_H_
-
-#include <CGAL/Euclidean_distance.h>
-#include <CGAL/Orthogonal_k_neighbor_search.h>
-#include <CGAL/Search_traits_d.h>
-#include <CGAL/Search_traits_adapter.h>
-#include <CGAL/property_map.h>
-
-#include <unordered_map>
-#include <list>
-#include <utility>
-
-#include "utils/UI_utils.h"
-#include "model/Complex_typedefs.h"
-
-template<typename SkBlComplex> class K_nearest_builder {
- private:
- typedef Geometry_trait Kernel;
- typedef Point Point_d;
- typedef std::pair<Point_d, unsigned> Point_d_with_id;
- typedef CGAL::Search_traits_d<Kernel> Traits_base;
- typedef CGAL::Search_traits_adapter<Point_d_with_id, CGAL::First_of_pair_property_map<Point_d_with_id>,
- Traits_base> Traits;
- typedef CGAL::Orthogonal_k_neighbor_search<Traits> Neighbor_search;
- typedef Neighbor_search::Tree Tree;
- typedef Neighbor_search::Distance Distance;
-
- SkBlComplex& complex_;
-
- public:
- /**
- * @brief Modify complex to be the expansion of the k-nearest neighbor
- * symetric graph.
- */
- K_nearest_builder(SkBlComplex& complex, unsigned k) : complex_(complex) {
- complex.keep_only_vertices();
- compute_edges(k);
- }
-
- private:
- double squared_eucl_distance(const Point& p1, const Point& p2) const {
- return Geometry_trait::Squared_distance_d()(p1, p2);
- }
-
- void compute_edges(unsigned k) {
- std::list<Point_d_with_id> points_with_id;
- for (auto v : complex_.vertex_range()) {
- Point_d_with_id point_v(complex_.point(v), v.vertex);
- points_with_id.push_back(point_v);
- }
-
- Tree tree(points_with_id.begin(), points_with_id.end());
-
- typedef typename SkBlComplex::Vertex_handle Vertex_handle;
- for (auto p : complex_.vertex_range()) {
- Neighbor_search search(tree, complex_.point(p), k + 1);
- for (auto it = ++search.begin(); it != search.end(); ++it) {
- Vertex_handle q(std::get<1>(it->first));
- if (p != q && complex_.contains_vertex(p) && complex_.contains_vertex(q))
- complex_.add_edge_without_blockers(p, q);
- }
- }
- }
-};
-
-#endif // UTILS_K_NEAREST_BUILDER_H_