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+from cython cimport numeric
+from libcpp.vector cimport vector
+from libcpp.utility cimport pair
+
+"""This file is part of the Gudhi Library. The Gudhi library
+ (Geometric Understanding in Higher Dimensions) is a generic C++
+ library for computational topology.
+
+ Author(s): Vincent Rouvreau
+
+ Copyright (C) 2016 INRIA
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+"""
+
+__author__ = "Vincent Rouvreau"
+__copyright__ = "Copyright (C) 2016 INRIA"
+__license__ = "GPL v3"
+
+cdef extern from "Witness_complex_interface.h" namespace "Gudhi":
+ cdef cppclass Witness_complex_interface "Gudhi::witness_complex::Witness_complex_interface":
+ Witness_complex_interface(vector[vector[pair[size_t, double]]] nearest_landmark_table)
+ void create_simplex_tree(Simplex_tree_interface_full_featured* simplex_tree, double max_alpha_square)
+ void create_simplex_tree(Simplex_tree_interface_full_featured* simplex_tree, double max_alpha_square,
+ unsigned limit_dimension)
+
+# WitnessComplex python interface
+cdef class WitnessComplex:
+ """Constructs (weak) witness complex for a given table of nearest landmarks
+ with respect to witnesses.
+ """
+
+ cdef Witness_complex_interface * thisptr
+
+ # Fake constructor that does nothing but documenting the constructor
+ def __init__(self, nearest_landmark_table=None):
+ """WitnessComplex constructor.
+
+ :param nearest_landmark_table: A list of nearest landmark.
+ :type nearest_landmark_table: list of list of pair of unsigned and double
+ """
+
+ # The real cython constructor
+ def __cinit__(self, nearest_landmark_table=None):
+ if nearest_landmark_table is not None:
+ self.thisptr = new Witness_complex_interface(nearest_landmark_table)
+
+ def __dealloc__(self):
+ if self.thisptr != NULL:
+ del self.thisptr
+
+ def __is_defined(self):
+ """Returns true if WitnessComplex pointer is not NULL.
+ """
+ return self.thisptr != NULL
+
+ def create_simplex_tree(self, max_alpha_square, limit_dimension = -1):
+ """
+ :param max_alpha_square: The maximum alpha square threshold the
+ simplices shall not exceed. Default is set to infinity.
+ :type max_alpha_square: float
+ :returns: A simplex tree created from the Delaunay Triangulation.
+ :rtype: SimplexTree
+ """
+ simplex_tree = SimplexTree()
+ if limit_dimension is not -1:
+ self.thisptr.create_simplex_tree(simplex_tree.thisptr, max_alpha_square, limit_dimension)
+ else:
+ self.thisptr.create_simplex_tree(simplex_tree.thisptr, max_alpha_square)
+ return simplex_tree