summaryrefslogtreecommitdiff
path: root/cython/doc/fileformats.rst
diff options
context:
space:
mode:
Diffstat (limited to 'cython/doc/fileformats.rst')
-rw-r--r--cython/doc/fileformats.rst33
1 files changed, 33 insertions, 0 deletions
diff --git a/cython/doc/fileformats.rst b/cython/doc/fileformats.rst
new file mode 100644
index 00000000..156ef4e4
--- /dev/null
+++ b/cython/doc/fileformats.rst
@@ -0,0 +1,33 @@
+File formats
+############
+
+Persistence Diagram
+*******************
+
+Such a file, whose extension is usually ``.pers``, contains a list of
+persistence intervals.
+
+Lines starting with ``#`` are ignored (comments).
+
+Other lines might contain 2, 3 or 4 values (the number of values on each line
+must be the same for all lines)::
+
+ [[field] dimension] birth death
+
+Here is a simple sample file::
+
+ # Persistence diagram example
+ 2 2.7 3.7
+ 2 9.6 14.
+ # Some comments
+ 3 34.2 34.974
+ 4 3. inf
+
+Other sample files can be found in the data/persistence_diagram folder.
+
+Such files can be generated with
+:meth:`gudhi.SimplexTree.write_persistence_diagram`, read with
+:meth:`gudhi.read_persistence_intervals_grouped_by_dimension`, or
+:meth:`gudhi.read_persistence_intervals_in_dimension` and displayed with
+:meth:`gudhi.plot_persistence_barcode` or
+:meth:`gudhi.plot_persistence_diagram`.