summaryrefslogtreecommitdiff
path: root/cython/include/Persistent_cohomology_interface.h
diff options
context:
space:
mode:
Diffstat (limited to 'cython/include/Persistent_cohomology_interface.h')
-rw-r--r--cython/include/Persistent_cohomology_interface.h121
1 files changed, 0 insertions, 121 deletions
diff --git a/cython/include/Persistent_cohomology_interface.h b/cython/include/Persistent_cohomology_interface.h
deleted file mode 100644
index 8cf71a4e..00000000
--- a/cython/include/Persistent_cohomology_interface.h
+++ /dev/null
@@ -1,121 +0,0 @@
-/* This file is part of the Gudhi Library. The Gudhi library
- * (Geometric Understanding in Higher Dimensions) is a generic C++
- * library for computational topology.
- *
- * Author(s): Vincent Rouvreau
- *
- * Copyright (C) 2016 Inria
- *
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- */
-
-#ifndef INCLUDE_PERSISTENT_COHOMOLOGY_INTERFACE_H_
-#define INCLUDE_PERSISTENT_COHOMOLOGY_INTERFACE_H_
-
-#include <gudhi/Persistent_cohomology.h>
-
-#include <vector>
-#include <utility> // for std::pair
-#include <algorithm> // for sort
-
-namespace Gudhi {
-
-template<class FilteredComplex>
-class Persistent_cohomology_interface : public
-persistent_cohomology::Persistent_cohomology<FilteredComplex, persistent_cohomology::Field_Zp> {
- private:
- /*
- * Compare two intervals by dimension, then by length.
- */
- struct cmp_intervals_by_dim_then_length {
- explicit cmp_intervals_by_dim_then_length(FilteredComplex * sc)
- : sc_(sc) { }
-
- template<typename Persistent_interval>
- bool operator()(const Persistent_interval & p1, const Persistent_interval & p2) {
- if (sc_->dimension(get < 0 > (p1)) == sc_->dimension(get < 0 > (p2)))
- return (sc_->filtration(get < 1 > (p1)) - sc_->filtration(get < 0 > (p1))
- > sc_->filtration(get < 1 > (p2)) - sc_->filtration(get < 0 > (p2)));
- else
- return (sc_->dimension(get < 0 > (p1)) > sc_->dimension(get < 0 > (p2)));
- }
- FilteredComplex* sc_;
- };
-
- public:
- Persistent_cohomology_interface(FilteredComplex* stptr)
- : persistent_cohomology::Persistent_cohomology<FilteredComplex, persistent_cohomology::Field_Zp>(*stptr),
- stptr_(stptr) { }
-
- Persistent_cohomology_interface(FilteredComplex* stptr, bool persistence_dim_max)
- : persistent_cohomology::Persistent_cohomology<FilteredComplex,
- persistent_cohomology::Field_Zp>(*stptr, persistence_dim_max),
- stptr_(stptr) { }
-
- std::vector<std::pair<int, std::pair<double, double>>> get_persistence(int homology_coeff_field,
- double min_persistence) {
- persistent_cohomology::Persistent_cohomology<FilteredComplex,
- persistent_cohomology::Field_Zp>::init_coefficients(homology_coeff_field);
- persistent_cohomology::Persistent_cohomology<FilteredComplex,
- persistent_cohomology::Field_Zp>::compute_persistent_cohomology(min_persistence);
-
- // Custom sort and output persistence
- cmp_intervals_by_dim_then_length cmp(stptr_);
- auto persistent_pairs = persistent_cohomology::Persistent_cohomology<FilteredComplex,
- persistent_cohomology::Field_Zp>::get_persistent_pairs();
- std::sort(std::begin(persistent_pairs), std::end(persistent_pairs), cmp);
-
- std::vector<std::pair<int, std::pair<double, double>>> persistence;
- for (auto pair : persistent_pairs) {
- persistence.push_back(std::make_pair(stptr_->dimension(get<0>(pair)),
- std::make_pair(stptr_->filtration(get<0>(pair)),
- stptr_->filtration(get<1>(pair)))));
- }
- return persistence;
- }
-
- std::vector<std::pair<std::vector<int>, std::vector<int>>> persistence_pairs() {
- auto pairs = persistent_cohomology::Persistent_cohomology<FilteredComplex,
- persistent_cohomology::Field_Zp>::get_persistent_pairs();
-
- std::vector<std::pair<std::vector<int>, std::vector<int>>> persistence_pairs;
- persistence_pairs.reserve(pairs.size());
- for (auto pair : pairs) {
- std::vector<int> birth;
- if (get<0>(pair) != stptr_->null_simplex()) {
- for (auto vertex : stptr_->simplex_vertex_range(get<0>(pair))) {
- birth.push_back(vertex);
- }
- }
-
- std::vector<int> death;
- if (get<1>(pair) != stptr_->null_simplex()) {
- for (auto vertex : stptr_->simplex_vertex_range(get<1>(pair))) {
- death.push_back(vertex);
- }
- }
-
- persistence_pairs.push_back(std::make_pair(birth, death));
- }
- return persistence_pairs;
- }
-
- private:
- // A copy
- FilteredComplex* stptr_;
-};
-
-} // namespace Gudhi
-
-#endif // INCLUDE_PERSISTENT_COHOMOLOGY_INTERFACE_H_