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Diffstat (limited to 'debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch')
-rw-r--r--debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch134
1 files changed, 36 insertions, 98 deletions
diff --git a/debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch b/debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch
index f574ed63..af6b0afb 100644
--- a/debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch
+++ b/debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch
@@ -3,119 +3,57 @@ Date: Wed, 25 Sep 2019 15:12:45 +0200
Subject: Disable tests that use DFSG-deleted data files.
---
- src/Nerve_GIC/example/CMakeLists.txt | 5 ----
- src/Nerve_GIC/utilities/CMakeLists.txt | 8 ------
- src/Persistent_cohomology/example/CMakeLists.txt | 4 ---
- src/Simplex_tree/example/CMakeLists.txt | 2 --
- src/python/CMakeLists.txt | 31 +-----------------------
- 5 files changed, 1 insertion(+), 49 deletions(-)
+ src/Nerve_GIC/example/CMakeLists.txt | 6 ------
+ src/Nerve_GIC/utilities/CMakeLists.txt | 7 -------
+ src/python/CMakeLists.txt | 3 ---
+ 3 files changed, 16 deletions(-)
diff --git a/src/Nerve_GIC/example/CMakeLists.txt b/src/Nerve_GIC/example/CMakeLists.txt
-index 1667472..37c4759 100644
+index 9faf1f3..bbfa592 100644
--- a/src/Nerve_GIC/example/CMakeLists.txt
+++ b/src/Nerve_GIC/example/CMakeLists.txt
-@@ -12,15 +12,10 @@ if (NOT CGAL_VERSION VERSION_LESS 4.11.0)
+@@ -10,12 +10,6 @@ endif()
- # Copy files for not to pollute sources when testing
- file(COPY "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-- file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-- file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+ # Copy files for not to pollute sources when testing
+ file(COPY "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+-file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+-file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
- add_test(NAME Nerve_GIC_example_CoordGIC COMMAND $<TARGET_FILE:CoordGIC>
- "${CMAKE_CURRENT_BINARY_DIR}/tore3D_1307.off" "0")
-
-- add_test(NAME Nerve_GIC_example_FuncGIC COMMAND $<TARGET_FILE:FuncGIC>
-- "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat.off"
-- "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat_PCA1")
-
- install(TARGETS CoordGIC DESTINATION bin)
- install(TARGETS FuncGIC DESTINATION bin)
+ add_test(NAME Nerve_GIC_example_CoordGIC COMMAND $<TARGET_FILE:CoordGIC>
+ "${CMAKE_CURRENT_BINARY_DIR}/tore3D_1307.off" "0")
+-
+-add_test(NAME Nerve_GIC_example_FuncGIC COMMAND $<TARGET_FILE:FuncGIC>
+- "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat.off"
+- "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat_PCA1")
diff --git a/src/Nerve_GIC/utilities/CMakeLists.txt b/src/Nerve_GIC/utilities/CMakeLists.txt
-index 65a08d9..3f16db9 100644
+index 4521a99..e28973f 100644
--- a/src/Nerve_GIC/utilities/CMakeLists.txt
+++ b/src/Nerve_GIC/utilities/CMakeLists.txt
-@@ -11,14 +11,6 @@ if (NOT CGAL_VERSION VERSION_LESS 4.11.0)
- endif()
+@@ -10,13 +10,6 @@ endif()
- file(COPY KeplerMapperVisuFromTxtFile.py km.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-- # Copy files for not to pollute sources when testing
-- file(COPY "${CMAKE_SOURCE_DIR}/data/points/human.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+ file(COPY KeplerMapperVisuFromTxtFile.py km.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+ # Copy files for not to pollute sources when testing
+-file(COPY "${CMAKE_SOURCE_DIR}/data/points/human.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-
-- add_test(NAME Nerve_GIC_utilities_nerve COMMAND $<TARGET_FILE:Nerve>
-- "human.off" "2" "10" "0.3")
+-add_test(NAME Nerve_GIC_utilities_nerve COMMAND $<TARGET_FILE:Nerve>
+- "human.off" "2" "10" "0.3")
-
-- add_test(NAME Nerve_GIC_utilities_VoronoiGIC COMMAND $<TARGET_FILE:VoronoiGIC>
-- "human.off" "100")
-
- install(TARGETS Nerve DESTINATION bin)
- install(TARGETS VoronoiGIC DESTINATION bin)
-diff --git a/src/Persistent_cohomology/example/CMakeLists.txt b/src/Persistent_cohomology/example/CMakeLists.txt
-index 4c08cd6..a7a7bcd 100644
---- a/src/Persistent_cohomology/example/CMakeLists.txt
-+++ b/src/Persistent_cohomology/example/CMakeLists.txt
-@@ -28,10 +28,6 @@ add_test(NAME Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D CO
- "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "3")
- add_test(NAME Persistent_cohomology_example_via_boundary_matrix COMMAND $<TARGET_FILE:rips_persistence_via_boundary_matrix>
- "${CMAKE_SOURCE_DIR}/data/points/Kl.off" "-r" "0.16" "-d" "3" "-p" "3" "-m" "100")
--add_test(NAME Persistent_cohomology_example_from_file_3_2_0 COMMAND $<TARGET_FILE:persistence_from_file>
-- "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "2" "-m" "0")
--add_test(NAME Persistent_cohomology_example_from_file_3_3_100 COMMAND $<TARGET_FILE:persistence_from_file>
-- "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "3" "-m" "100")
-
- install(TARGETS plain_homology DESTINATION bin)
- install(TARGETS persistence_from_simple_simplex_tree DESTINATION bin)
-diff --git a/src/Simplex_tree/example/CMakeLists.txt b/src/Simplex_tree/example/CMakeLists.txt
-index a0aabee..5c572f8 100644
---- a/src/Simplex_tree/example/CMakeLists.txt
-+++ b/src/Simplex_tree/example/CMakeLists.txt
-@@ -28,8 +28,6 @@ if(GMP_FOUND AND NOT CGAL_VERSION VERSION_LESS 4.11.0)
- if (TBB_FOUND)
- target_link_libraries(Simplex_tree_example_alpha_shapes_3_from_off ${TBB_LIBRARIES})
- endif()
-- add_test(NAME Simplex_tree_example_alpha_shapes_3_from_off COMMAND $<TARGET_FILE:Simplex_tree_example_alpha_shapes_3_from_off>
-- "${CMAKE_SOURCE_DIR}/data/points/bunny_5000.off")
-
- endif()
+-add_test(NAME Nerve_GIC_utilities_VoronoiGIC COMMAND $<TARGET_FILE:VoronoiGIC>
+- "human.off" "100")
+ install(TARGETS Nerve DESTINATION bin)
+ install(TARGETS VoronoiGIC DESTINATION bin)
diff --git a/src/python/CMakeLists.txt b/src/python/CMakeLists.txt
-index ab08cd6..1a2f18b 100644
+index 39e2acd..b3f2268 100644
--- a/src/python/CMakeLists.txt
+++ b/src/python/CMakeLists.txt
-@@ -355,36 +355,7 @@ if(PYTHONINTERP_FOUND)
-
- add_gudhi_py_test(test_bottleneck_distance)
-
-- # Cover complex
-- file(COPY ${CMAKE_SOURCE_DIR}/data/points/human.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-- file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-- file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1 DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
-- add_test(NAME cover_complex_nerve_example_py_test
-- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}"
-- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/nerve_of_a_covering.py"
-- -f human.off -c 2 -r 10 -g 0.3)
--
-- add_test(NAME cover_complex_coordinate_gic_example_py_test
-- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}"
-- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/coordinate_graph_induced_complex.py"
-- -f human.off -c 0 -v)
--
-- add_test(NAME cover_complex_functional_gic_example_py_test
-- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}"
-- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/functional_graph_induced_complex.py"
-- -o lucky_cat.off
-- -f lucky_cat_PCA1 -v)
--
-- add_test(NAME cover_complex_voronoi_gic_example_py_test
-- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
-- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}"
-- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/voronoi_graph_induced_complex.py"
-- -f human.off -n 700 -v)
--
-- add_gudhi_py_test(test_cover_complex)
-+
+@@ -435,9 +435,6 @@ if(PYTHONINTERP_FOUND)
endif (NOT CGAL_VERSION VERSION_LESS 4.11.0)
- if (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0)
+ # Cover complex
+- file(COPY ${CMAKE_SOURCE_DIR}/data/points/human.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+- file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+- file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1 DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+ add_test(NAME cover_complex_nerve_example_py_test
+ WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
+ COMMAND ${CMAKE_COMMAND} -E env "${GUDHI_PYTHON_PATH_ENV}"
generated by cgit v1.2.3 (git 2.39.1) at 2024-05-04 09:44:14 +0000