diff options
Diffstat (limited to 'debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch')
-rw-r--r-- | debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch | 121 |
1 files changed, 121 insertions, 0 deletions
diff --git a/debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch b/debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch new file mode 100644 index 00000000..82a72911 --- /dev/null +++ b/debian/patches/0001-Disable-tests-that-use-DFSG-deleted-data-files.patch @@ -0,0 +1,121 @@ +From: Gard Spreemann <gspr@nonempty.org> +Date: Wed, 25 Sep 2019 15:12:45 +0200 +Subject: Disable tests that use DFSG-deleted data files. + +--- + src/Nerve_GIC/example/CMakeLists.txt | 5 ---- + src/Nerve_GIC/utilities/CMakeLists.txt | 8 ------ + src/Persistent_cohomology/example/CMakeLists.txt | 4 --- + src/Simplex_tree/example/CMakeLists.txt | 2 -- + src/python/CMakeLists.txt | 31 +----------------------- + 5 files changed, 1 insertion(+), 49 deletions(-) + +diff --git a/src/Nerve_GIC/example/CMakeLists.txt b/src/Nerve_GIC/example/CMakeLists.txt +index 1667472..37c4759 100644 +--- a/src/Nerve_GIC/example/CMakeLists.txt ++++ b/src/Nerve_GIC/example/CMakeLists.txt +@@ -12,15 +12,10 @@ if (NOT CGAL_VERSION VERSION_LESS 4.11.0) + + # Copy files for not to pollute sources when testing + file(COPY "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) +- file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) +- file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) + + add_test(NAME Nerve_GIC_example_CoordGIC COMMAND $<TARGET_FILE:CoordGIC> + "${CMAKE_CURRENT_BINARY_DIR}/tore3D_1307.off" "0") + +- add_test(NAME Nerve_GIC_example_FuncGIC COMMAND $<TARGET_FILE:FuncGIC> +- "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat.off" +- "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat_PCA1") + + install(TARGETS CoordGIC DESTINATION bin) + install(TARGETS FuncGIC DESTINATION bin) +diff --git a/src/Nerve_GIC/utilities/CMakeLists.txt b/src/Nerve_GIC/utilities/CMakeLists.txt +index 65a08d9..3f16db9 100644 +--- a/src/Nerve_GIC/utilities/CMakeLists.txt ++++ b/src/Nerve_GIC/utilities/CMakeLists.txt +@@ -11,14 +11,6 @@ if (NOT CGAL_VERSION VERSION_LESS 4.11.0) + endif() + + file(COPY KeplerMapperVisuFromTxtFile.py km.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) +- # Copy files for not to pollute sources when testing +- file(COPY "${CMAKE_SOURCE_DIR}/data/points/human.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) +- +- add_test(NAME Nerve_GIC_utilities_nerve COMMAND $<TARGET_FILE:Nerve> +- "human.off" "2" "10" "0.3") +- +- add_test(NAME Nerve_GIC_utilities_VoronoiGIC COMMAND $<TARGET_FILE:VoronoiGIC> +- "human.off" "100") + + install(TARGETS Nerve DESTINATION bin) + install(TARGETS VoronoiGIC DESTINATION bin) +diff --git a/src/Persistent_cohomology/example/CMakeLists.txt b/src/Persistent_cohomology/example/CMakeLists.txt +index 94ec13c..4a48d21 100644 +--- a/src/Persistent_cohomology/example/CMakeLists.txt ++++ b/src/Persistent_cohomology/example/CMakeLists.txt +@@ -28,10 +28,6 @@ add_test(NAME Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D CO + "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "3") + add_test(NAME Persistent_cohomology_example_via_boundary_matrix COMMAND $<TARGET_FILE:rips_persistence_via_boundary_matrix> + "${CMAKE_SOURCE_DIR}/data/points/Kl.off" "-r" "0.16" "-d" "3" "-p" "3" "-m" "100") +-add_test(NAME Persistent_cohomology_example_from_file_3_2_0 COMMAND $<TARGET_FILE:persistence_from_file> +- "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "2" "-m" "0") +-add_test(NAME Persistent_cohomology_example_from_file_3_3_100 COMMAND $<TARGET_FILE:persistence_from_file> +- "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "3" "-m" "100") + + install(TARGETS plain_homology DESTINATION bin) + install(TARGETS persistence_from_simple_simplex_tree DESTINATION bin) +diff --git a/src/Simplex_tree/example/CMakeLists.txt b/src/Simplex_tree/example/CMakeLists.txt +index f99b164..ae302dc 100644 +--- a/src/Simplex_tree/example/CMakeLists.txt ++++ b/src/Simplex_tree/example/CMakeLists.txt +@@ -25,8 +25,6 @@ if(GMP_FOUND AND NOT CGAL_VERSION VERSION_LESS 4.11.0) + if (TBB_FOUND) + target_link_libraries(Simplex_tree_example_alpha_shapes_3_from_off ${TBB_LIBRARIES}) + endif() +- add_test(NAME Simplex_tree_example_alpha_shapes_3_from_off COMMAND $<TARGET_FILE:Simplex_tree_example_alpha_shapes_3_from_off> +- "${CMAKE_SOURCE_DIR}/data/points/bunny_5000.off") + + endif() + +diff --git a/src/python/CMakeLists.txt b/src/python/CMakeLists.txt +index 5508cbc..1778290 100644 +--- a/src/python/CMakeLists.txt ++++ b/src/python/CMakeLists.txt +@@ -256,36 +256,7 @@ if(PYTHONINTERP_FOUND) + + add_gudhi_py_test(test_bottleneck_distance) + +- # Cover complex +- file(COPY ${CMAKE_SOURCE_DIR}/data/points/human.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) +- file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) +- file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1 DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) +- add_test(NAME cover_complex_nerve_example_py_test +- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} +- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" +- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/nerve_of_a_covering.py" +- -f human.off -c 2 -r 10 -g 0.3) +- +- add_test(NAME cover_complex_coordinate_gic_example_py_test +- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} +- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" +- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/coordinate_graph_induced_complex.py" +- -f human.off -c 0 -v) +- +- add_test(NAME cover_complex_functional_gic_example_py_test +- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} +- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" +- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/functional_graph_induced_complex.py" +- -o lucky_cat.off +- -f lucky_cat_PCA1 -v) +- +- add_test(NAME cover_complex_voronoi_gic_example_py_test +- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} +- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" +- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/voronoi_graph_induced_complex.py" +- -f human.off -n 700 -v) +- +- add_gudhi_py_test(test_cover_complex) ++ + endif (NOT CGAL_VERSION VERSION_LESS 4.11.0) + + if (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.11.0) |