diff options
Diffstat (limited to 'debian/patches/0002-Disable-tests-that-use-DFSG-deleted-data-files.patch')
| -rw-r--r-- | debian/patches/0002-Disable-tests-that-use-DFSG-deleted-data-files.patch | 121 |
1 files changed, 0 insertions, 121 deletions
diff --git a/debian/patches/0002-Disable-tests-that-use-DFSG-deleted-data-files.patch b/debian/patches/0002-Disable-tests-that-use-DFSG-deleted-data-files.patch deleted file mode 100644 index e59a4f8b..00000000 --- a/debian/patches/0002-Disable-tests-that-use-DFSG-deleted-data-files.patch +++ /dev/null @@ -1,121 +0,0 @@ -From: Gard Spreemann <gspreemann@gmail.com> -Date: Mon, 10 Sep 2018 05:17:29 +0200 -Subject: Disable tests that use DFSG-deleted data files. - ---- - cython/CMakeLists.txt | 30 ---------------------------- - example/Nerve_GIC/CMakeLists.txt | 6 ------ - example/Persistent_cohomology/CMakeLists.txt | 4 ---- - example/Simplex_tree/CMakeLists.txt | 2 -- - utilities/Nerve_GIC/CMakeLists.txt | 8 -------- - 5 files changed, 50 deletions(-) - -diff --git a/cython/CMakeLists.txt b/cython/CMakeLists.txt -index 829d53b..219b99e 100644 ---- a/cython/CMakeLists.txt -+++ b/cython/CMakeLists.txt -@@ -265,36 +265,6 @@ if(CYTHON_FOUND) - - add_gudhi_py_test(test_bottleneck_distance) - -- # Cover complex -- file(COPY ${CMAKE_SOURCE_DIR}/data/points/human.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) -- file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) -- file(COPY ${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1 DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) -- add_test(NAME cover_complex_nerve_example_py_test -- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} -- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" -- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/nerve_of_a_covering.py" -- -f human.off -c 2 -r 10 -g 0.3) -- -- add_test(NAME cover_complex_coordinate_gic_example_py_test -- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} -- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" -- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/coordinate_graph_induced_complex.py" -- -f human.off -c 0 -v) -- -- add_test(NAME cover_complex_functional_gic_example_py_test -- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} -- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" -- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/functional_graph_induced_complex.py" -- -o lucky_cat.off -- -f lucky_cat_PCA1 -v) -- -- add_test(NAME cover_complex_voronoi_gic_example_py_test -- WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR} -- COMMAND ${CMAKE_COMMAND} -E env "PYTHONPATH=${CMAKE_CURRENT_BINARY_DIR}" -- ${PYTHON_EXECUTABLE} "${CMAKE_CURRENT_SOURCE_DIR}/example/voronoi_graph_induced_complex.py" -- -f human.off -n 700 -v) -- -- add_gudhi_py_test(test_cover_complex) - endif (NOT CGAL_VERSION VERSION_LESS 4.8.1) - - if (NOT CGAL_WITH_EIGEN3_VERSION VERSION_LESS 4.7.0) -diff --git a/example/Nerve_GIC/CMakeLists.txt b/example/Nerve_GIC/CMakeLists.txt -index fdecf86..f63e08e 100644 ---- a/example/Nerve_GIC/CMakeLists.txt -+++ b/example/Nerve_GIC/CMakeLists.txt -@@ -12,16 +12,10 @@ if (NOT CGAL_VERSION VERSION_LESS 4.8.1) - - # Copy files for not to pollute sources when testing - file(COPY "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) -- file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) -- file(COPY "${CMAKE_SOURCE_DIR}/data/points/COIL_database/lucky_cat_PCA1" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) - - add_test(NAME Nerve_GIC_example_CoordGIC COMMAND $<TARGET_FILE:CoordGIC> - "${CMAKE_CURRENT_BINARY_DIR}/tore3D_1307.off" "0") - -- add_test(NAME Nerve_GIC_example_FuncGIC COMMAND $<TARGET_FILE:FuncGIC> -- "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat.off" -- "${CMAKE_CURRENT_BINARY_DIR}/lucky_cat_PCA1") -- - install(TARGETS CoordGIC DESTINATION bin) - install(TARGETS FuncGIC DESTINATION bin) - -diff --git a/example/Persistent_cohomology/CMakeLists.txt b/example/Persistent_cohomology/CMakeLists.txt -index 0f73151..4cac586 100644 ---- a/example/Persistent_cohomology/CMakeLists.txt -+++ b/example/Persistent_cohomology/CMakeLists.txt -@@ -28,10 +28,6 @@ add_test(NAME Persistent_cohomology_example_from_rips_step_by_step_on_tore_3D CO - "${CMAKE_SOURCE_DIR}/data/points/tore3D_1307.off" "-r" "0.25" "-m" "0.5" "-d" "3" "-p" "3") - add_test(NAME Persistent_cohomology_example_via_boundary_matrix COMMAND $<TARGET_FILE:rips_persistence_via_boundary_matrix> - "${CMAKE_SOURCE_DIR}/data/points/Kl.off" "-r" "0.16" "-d" "3" "-p" "3" "-m" "100") --add_test(NAME Persistent_cohomology_example_from_file_3_2_0 COMMAND $<TARGET_FILE:persistence_from_file> -- "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "2" "-m" "0") --add_test(NAME Persistent_cohomology_example_from_file_3_3_100 COMMAND $<TARGET_FILE:persistence_from_file> -- "${CMAKE_SOURCE_DIR}/data/filtered_simplicial_complex/bunny_5000_complex.fsc" "-p" "3" "-m" "100") - - install(TARGETS plain_homology DESTINATION bin) - install(TARGETS persistence_from_simple_simplex_tree DESTINATION bin) -diff --git a/example/Simplex_tree/CMakeLists.txt b/example/Simplex_tree/CMakeLists.txt -index 857e851..48bb069 100644 ---- a/example/Simplex_tree/CMakeLists.txt -+++ b/example/Simplex_tree/CMakeLists.txt -@@ -29,8 +29,6 @@ if(GMP_FOUND AND CGAL_FOUND) - if (TBB_FOUND) - target_link_libraries(Simplex_tree_example_alpha_shapes_3_from_off ${TBB_LIBRARIES}) - endif() -- add_test(NAME Simplex_tree_example_alpha_shapes_3_from_off COMMAND $<TARGET_FILE:Simplex_tree_example_alpha_shapes_3_from_off> -- "${CMAKE_SOURCE_DIR}/data/points/bunny_5000.off") - - install(TARGETS Simplex_tree_example_alpha_shapes_3_from_off DESTINATION bin) - -diff --git a/utilities/Nerve_GIC/CMakeLists.txt b/utilities/Nerve_GIC/CMakeLists.txt -index 215f9df..20aeb8e 100644 ---- a/utilities/Nerve_GIC/CMakeLists.txt -+++ b/utilities/Nerve_GIC/CMakeLists.txt -@@ -11,14 +11,6 @@ if (NOT CGAL_VERSION VERSION_LESS 4.8.1) - endif() - - file(COPY KeplerMapperVisuFromTxtFile.py km.py DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) -- # Copy files for not to pollute sources when testing -- file(COPY "${CMAKE_SOURCE_DIR}/data/points/human.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/) -- -- add_test(NAME Nerve_GIC_utilities_nerve COMMAND $<TARGET_FILE:Nerve> -- "human.off" "2" "10" "0.3") -- -- add_test(NAME Nerve_GIC_utilities_VoronoiGIC COMMAND $<TARGET_FILE:VoronoiGIC> -- "human.off" "100") - - install(TARGETS Nerve DESTINATION bin) - install(TARGETS VoronoiGIC DESTINATION bin) |