5 files changed, 200 insertions, 0 deletions
diff --git a/example/Alpha_complex/Alpha_complex_from_off.cpp b/example/Alpha_complex/Alpha_complex_from_off.cpp
new file mode 100644
index 00000000..7836d59a
--- /dev/null
+++ b/example/Alpha_complex/Alpha_complex_from_off.cpp
@@ -0,0 +1,56 @@
+#include <gudhi/Alpha_complex.h>
+#include <CGAL/Epick_d.h>
+
+#include <iostream>
+#include <string>
+
+void usage(int nbArgs, char * const progName) {
+  std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n";
+  std::cerr << "Usage: " << progName << " filename.off alpha_square_max_value [ouput_file.txt]\n";
+  std::cerr << "       i.e.: " << progName << " ../../data/points/alphacomplexdoc.off 60.0\n";
+  exit(-1);  // ----- >>
+}
+
+int main(int argc, char **argv) {
+  if ((argc != 3) && (argc != 4)) usage(argc, (argv[0] - 1));
+
+  std::string off_file_name(argv[1]);
+  double alpha_square_max_value = atof(argv[2]);
+
+  // ----------------------------------------------------------------------------
+  // Init of an alpha complex from an OFF file
+  // ----------------------------------------------------------------------------
+  typedef CGAL::Epick_d< CGAL::Dynamic_dimension_tag > Kernel;
+  Gudhi::alpha_complex::Alpha_complex<Kernel> alpha_complex_from_file(off_file_name, alpha_square_max_value);
+
+  std::streambuf* streambufffer;
+  std::ofstream ouput_file_stream;
+
+  if (argc == 4) {
+    ouput_file_stream.open(std::string(argv[3]));
+    streambufffer = ouput_file_stream.rdbuf();
+  } else {
+    streambufffer = std::cout.rdbuf();
+  }
+
+  std::ostream output_stream(streambufffer);
+
+  // ----------------------------------------------------------------------------
+  // Display information about the alpha complex
+  // ----------------------------------------------------------------------------
+  output_stream << "Alpha complex is of dimension " << alpha_complex_from_file.dimension() <<
+      " - " << alpha_complex_from_file.num_simplices() << " simplices - " <<
+      alpha_complex_from_file.num_vertices() << " vertices." << std::endl;
+
+  output_stream << "Iterator on alpha complex simplices in the filtration order, with [filtration value]:" << std::endl;
+  for (auto f_simplex : alpha_complex_from_file.filtration_simplex_range()) {
+    output_stream << "   ( ";
+    for (auto vertex : alpha_complex_from_file.simplex_vertex_range(f_simplex)) {
+      output_stream << vertex << " ";
+    }
+    output_stream << ") -> " << "[" << alpha_complex_from_file.filtration(f_simplex) << "] ";
+    output_stream << std::endl;
+  }
+  ouput_file_stream.close();
+  return 0;
+}
diff --git a/example/Alpha_complex/Alpha_complex_from_points.cpp b/example/Alpha_complex/Alpha_complex_from_points.cpp
new file mode 100644
index 00000000..49f77276
--- /dev/null
+++ b/example/Alpha_complex/Alpha_complex_from_points.cpp
@@ -0,0 +1,62 @@
+#include <CGAL/Epick_d.h>
+#include <gudhi/Alpha_complex.h>
+
+#include <iostream>
+#include <string>
+#include <vector>
+#include <limits>  // for numeric limits
+
+typedef CGAL::Epick_d< CGAL::Dimension_tag<2> > Kernel;
+typedef Kernel::Point_d Point;
+typedef std::vector<Point> Vector_of_points;
+
+void usage(int nbArgs, char * const progName) {
+  std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n";
+  std::cerr << "Usage: " << progName << " [alpha_square_max_value]\n";
+  std::cerr << "       i.e.: " << progName << " 60.0\n";
+  exit(-1);  // ----- >>
+}
+
+int main(int argc, char **argv) {
+  if ((argc != 1) && (argc != 2)) usage(argc, (argv[0] - 1));
+
+  // Delaunay complex if alpha_square_max_value is not given by the user.
+  double alpha_square_max_value = std::numeric_limits<double>::infinity();
+  if (argc == 2)
+    alpha_square_max_value = atof(argv[1]);
+
+  // ----------------------------------------------------------------------------
+  // Init of a list of points
+  // ----------------------------------------------------------------------------
+  Vector_of_points points;
+  points.push_back(Point(1.0, 1.0));
+  points.push_back(Point(7.0, 0.0));
+  points.push_back(Point(4.0, 6.0));
+  points.push_back(Point(9.0, 6.0));
+  points.push_back(Point(0.0, 14.0));
+  points.push_back(Point(2.0, 19.0));
+  points.push_back(Point(9.0, 17.0));
+
+  // ----------------------------------------------------------------------------
+  // Init of an alpha complex from the list of points
+  // ----------------------------------------------------------------------------
+  Gudhi::alpha_complex::Alpha_complex<Kernel> alpha_complex_from_points(points, alpha_square_max_value);
+
+  // ----------------------------------------------------------------------------
+  // Display information about the alpha complex
+  // ----------------------------------------------------------------------------
+  std::cout << "Alpha complex is of dimension " << alpha_complex_from_points.dimension() <<
+      " - " << alpha_complex_from_points.num_simplices() << " simplices - " <<
+      alpha_complex_from_points.num_vertices() << " vertices." << std::endl;
+
+  std::cout << "Iterator on alpha complex simplices in the filtration order, with [filtration value]:" << std::endl;
+  for (auto f_simplex : alpha_complex_from_points.filtration_simplex_range()) {
+    std::cout << "   ( ";
+    for (auto vertex : alpha_complex_from_points.simplex_vertex_range(f_simplex)) {
+      std::cout << vertex << " ";
+    }
+    std::cout << ") -> " << "[" << alpha_complex_from_points.filtration(f_simplex) << "] ";
+    std::cout << std::endl;
+  }
+  return 0;
+}
diff --git a/example/Alpha_complex/CMakeLists.txt b/example/Alpha_complex/CMakeLists.txt
new file mode 100644
index 00000000..71a95d61
--- /dev/null
+++ b/example/Alpha_complex/CMakeLists.txt
@@ -0,0 +1,33 @@
+cmake_minimum_required(VERSION 2.6)
+project(Alpha_complex_examples)
+
+# need CGAL 4.7
+# cmake -DCGAL_DIR=~/workspace/CGAL-4.7-Ic-41 ../../..
+if(CGAL_FOUND)
+  if (NOT CGAL_VERSION VERSION_LESS 4.7.0)
+    if (EIGEN3_FOUND)
+      add_executable ( alphapoints Alpha_complex_from_points.cpp )
+      target_link_libraries(alphapoints  ${Boost_SYSTEM_LIBRARY} ${Boost_THREAD_LIBRARY} ${CGAL_LIBRARY})
+      add_executable ( alphaoffreader Alpha_complex_from_off.cpp )
+      target_link_libraries(alphaoffreader  ${Boost_SYSTEM_LIBRARY} ${Boost_THREAD_LIBRARY} ${CGAL_LIBRARY})
+      if (TBB_FOUND)
+        target_link_libraries(alphapoints ${TBB_LIBRARIES})
+        target_link_libraries(alphaoffreader ${TBB_LIBRARIES})
+      endif()
+
+      add_test(alphapoints ${CMAKE_CURRENT_BINARY_DIR}/alphapoints)
+      # Do not forget to copy test files in current binary dir
+      file(COPY "${CMAKE_SOURCE_DIR}/data/points/alphacomplexdoc.off" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+      add_test(alphaoffreader_doc_60 ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader alphacomplexdoc.off 60.0 ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader_result_60.txt)
+      add_test(alphaoffreader_doc_32 ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader alphacomplexdoc.off 32.0 ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader_result_32.txt)
+      if (DIFF_PATH)
+        # Do not forget to copy test results files in current binary dir
+        file(COPY "alphaoffreader_for_doc_32.txt" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+        file(COPY "alphaoffreader_for_doc_60.txt" DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/)
+
+        add_test(alphaoffreader_doc_60_diff_files ${DIFF_PATH} ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader_result_60.txt ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader_for_doc_60.txt)
+        add_test(alphaoffreader_doc_32_diff_files ${DIFF_PATH} ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader_result_32.txt ${CMAKE_CURRENT_BINARY_DIR}/alphaoffreader_for_doc_32.txt)
+      endif()
+    endif(EIGEN3_FOUND)
+  endif(NOT CGAL_VERSION VERSION_LESS 4.7.0)
+endif(CGAL_FOUND)
diff --git a/example/Alpha_complex/alphaoffreader_for_doc_32.txt b/example/Alpha_complex/alphaoffreader_for_doc_32.txt
new file mode 100644
index 00000000..13183e86
--- /dev/null
+++ b/example/Alpha_complex/alphaoffreader_for_doc_32.txt
@@ -0,0 +1,22 @@
+Alpha complex is of dimension 2 - 20 simplices - 7 vertices.
+Iterator on alpha complex simplices in the filtration order, with [filtration value]:
+   ( 0 ) -> [0] 
+   ( 1 ) -> [0] 
+   ( 2 ) -> [0] 
+   ( 3 ) -> [0] 
+   ( 4 ) -> [0] 
+   ( 5 ) -> [0] 
+   ( 6 ) -> [0] 
+   ( 3 2 ) -> [6.25] 
+   ( 5 4 ) -> [7.25] 
+   ( 2 0 ) -> [8.5] 
+   ( 1 0 ) -> [9.25] 
+   ( 3 1 ) -> [10] 
+   ( 2 1 ) -> [11.25] 
+   ( 3 2 1 ) -> [12.5] 
+   ( 2 1 0 ) -> [12.9959] 
+   ( 6 5 ) -> [13.25] 
+   ( 4 2 ) -> [20] 
+   ( 6 4 ) -> [22.7367] 
+   ( 6 5 4 ) -> [22.7367] 
+   ( 6 3 ) -> [30.25] 
diff --git a/example/Alpha_complex/alphaoffreader_for_doc_60.txt b/example/Alpha_complex/alphaoffreader_for_doc_60.txt
new file mode 100644
index 00000000..71f29a00
--- /dev/null
+++ b/example/Alpha_complex/alphaoffreader_for_doc_60.txt
@@ -0,0 +1,27 @@
+Alpha complex is of dimension 2 - 25 simplices - 7 vertices.
+Iterator on alpha complex simplices in the filtration order, with [filtration value]:
+   ( 0 ) -> [0] 
+   ( 1 ) -> [0] 
+   ( 2 ) -> [0] 
+   ( 3 ) -> [0] 
+   ( 4 ) -> [0] 
+   ( 5 ) -> [0] 
+   ( 6 ) -> [0] 
+   ( 3 2 ) -> [6.25] 
+   ( 5 4 ) -> [7.25] 
+   ( 2 0 ) -> [8.5] 
+   ( 1 0 ) -> [9.25] 
+   ( 3 1 ) -> [10] 
+   ( 2 1 ) -> [11.25] 
+   ( 3 2 1 ) -> [12.5] 
+   ( 2 1 0 ) -> [12.9959] 
+   ( 6 5 ) -> [13.25] 
+   ( 4 2 ) -> [20] 
+   ( 6 4 ) -> [22.7367] 
+   ( 6 5 4 ) -> [22.7367] 
+   ( 6 3 ) -> [30.25] 
+   ( 6 2 ) -> [36.5] 
+   ( 6 3 2 ) -> [36.5] 
+   ( 6 4 2 ) -> [37.2449] 
+   ( 4 0 ) -> [59.7107] 
+   ( 4 2 0 ) -> [59.7107]