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+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Authors: Francois Godi, small modifications by Pawel Dlotko
+ *
+ * Copyright (C) 2015 INRIA
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#define CGAL_HAS_THREADS
+
+#include <gudhi/Bottleneck.h>
+#include <iostream>
+#include <vector>
+#include <utility> // for pair
+#include <fstream>
+#include <sstream>
+#include <string>
+
+std::vector< std::pair<double, double> > read_diagram_from_file(const char* filename) {
+ std::ifstream in;
+ in.open(filename);
+ std::vector< std::pair<double, double> > result;
+ if (!in.is_open()) {
+ std::cerr << "File : " << filename << " do not exist. The program will now terminate \n";
+ throw "File do not exist \n";
+ }
+
+ std::string line;
+ while (!in.eof()) {
+ getline(in, line);
+ if (line.length() != 0) {
+ std::stringstream lineSS;
+ lineSS << line;
+ double beginn, endd;
+ lineSS >> beginn;
+ lineSS >> endd;
+ result.push_back(std::make_pair(beginn, endd));
+ }
+ }
+ in.close();
+ return result;
+} // read_diagram_from_file
+
+int main(int argc, char** argv) {
+ if (argc < 3) {
+ std::cout << "To run this program please provide as an input two files with persistence diagrams. Each file " <<
+ "should contain a birth-death pair per line. Third, optional parameter is an error bound on a bottleneck" <<
+ " distance (set by default to zero). The program will now terminate \n";
+ }
+ std::vector< std::pair< double, double > > diag1 = read_diagram_from_file(argv[1]);
+ std::vector< std::pair< double, double > > diag2 = read_diagram_from_file(argv[2]);
+ double tolerance = 0.;
+ if (argc == 4) {
+ tolerance = atof(argv[3]);
+ }
+ double b = Gudhi::persistence_diagram::bottleneck_distance(diag1, diag2, tolerance);
+ std::cout << "The distance between the diagrams is : " << b << ". The tolerance is : " << tolerance << std::endl;
+}