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Diffstat (limited to 'example/Persistent_cohomology/plain_homology.cpp')
-rw-r--r-- | example/Persistent_cohomology/plain_homology.cpp | 94 |
1 files changed, 0 insertions, 94 deletions
diff --git a/example/Persistent_cohomology/plain_homology.cpp b/example/Persistent_cohomology/plain_homology.cpp deleted file mode 100644 index a2256060..00000000 --- a/example/Persistent_cohomology/plain_homology.cpp +++ /dev/null @@ -1,94 +0,0 @@ -/* This file is part of the Gudhi Library. The Gudhi library - * (Geometric Understanding in Higher Dimensions) is a generic C++ - * library for computational topology. - * - * Author(s): Marc Glisse - * - * Copyright (C) 2015 Inria - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see <http://www.gnu.org/licenses/>. - */ - -#include <gudhi/Simplex_tree.h> -#include <gudhi/Persistent_cohomology.h> - -#include <iostream> -#include <vector> -#include <cstdint> // for std::uint8_t - -/* We could perfectly well use the default Simplex_tree<> (which uses - * Simplex_tree_options_full_featured), the following simply demonstrates - * how to save on storage by not storing a filtration value. */ - -struct MyOptions : Gudhi::Simplex_tree_options_full_featured { - // Implicitly use 0 as filtration value for all simplices - static const bool store_filtration = false; - // The persistence algorithm needs this - static const bool store_key = true; - // I have few vertices - typedef short Vertex_handle; - // Maximum number of simplices to compute persistence is 2^8 - 1 = 255. One is reserved for null_key - typedef std::uint8_t Simplex_key; -}; - -using ST = Gudhi::Simplex_tree<MyOptions>; -using Field_Zp = Gudhi::persistent_cohomology::Field_Zp; -using Persistent_cohomology = Gudhi::persistent_cohomology::Persistent_cohomology<ST, Field_Zp>; - -int main() { - ST st; - - /* Complex to build. */ - /* 1 3 */ - /* o---o */ - /* /X\ / */ - /* o---o o */ - /* 2 0 4 */ - - const short triangle012[] = {0, 1, 2}; - const short edge03[] = {0, 3}; - const short edge13[] = {1, 3}; - const short vertex4[] = {4}; - st.insert_simplex_and_subfaces(triangle012); - st.insert_simplex_and_subfaces(edge03); - st.insert_simplex(edge13); - st.insert_simplex(vertex4); - - // Sort the simplices in the order of the filtration - st.initialize_filtration(); - - // Class for homology computation - Persistent_cohomology pcoh(st); - - // Initialize the coefficient field Z/2Z for homology - pcoh.init_coefficients(2); - - // Compute the persistence diagram of the complex - pcoh.compute_persistent_cohomology(); - - // Print the result. The format is, on each line: 2 dim 0 inf - // where 2 represents the field, dim the dimension of the feature. - // 2 0 0 inf - // 2 0 0 inf - // 2 1 0 inf - // means that in Z/2Z-homology, the Betti numbers are b0=2 and b1=1. - pcoh.output_diagram(); - - // Print the Betti numbers are b0=2 and b1=1. - std::cout << std::endl; - std::cout << "The Betti numbers are : "; - for (int i = 0; i < st.dimension(); i++) - std::cout << "b" << i << " = " << pcoh.betti_number(i) << " ; "; - std::cout << std::endl; -} |