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-rw-r--r--example/Rips_complex/example_one_skeleton_rips_from_distance_matrix.cpp58
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diff --git a/example/Rips_complex/example_one_skeleton_rips_from_distance_matrix.cpp b/example/Rips_complex/example_one_skeleton_rips_from_distance_matrix.cpp
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+++ b/example/Rips_complex/example_one_skeleton_rips_from_distance_matrix.cpp
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+#include <gudhi/Rips_complex.h>
+#include <gudhi/Simplex_tree.h>
+#include <gudhi/distance_functions.h>
+
+#include <iostream>
+#include <string>
+#include <vector>
+#include <limits> // for std::numeric_limits
+
+int main() {
+ // Type definitions
+ using Simplex_tree = Gudhi::Simplex_tree<>;
+ using Filtration_value = Simplex_tree::Filtration_value;
+ using Rips_complex = Gudhi::rips_complex::Rips_complex<Filtration_value>;
+ using Distance_matrix = std::vector<std::vector<Filtration_value>>;
+
+ // User defined distance matrix is:
+ // | 0 0.94 0.77 0.99 0.11 |
+ // | 0.94 0 0.26 0.99 0.39 |
+ // | 0.77 0.26 0 0.28 0.97 |
+ // | 0.99 0.99 0.28 0 0.30 |
+ // | 0.11 0.39 0.97 0.30 0 |
+
+ Distance_matrix distances;
+ distances.push_back({});
+ distances.push_back({0.94});
+ distances.push_back({0.77, 0.26});
+ distances.push_back({0.99, 0.99, 0.28});
+ distances.push_back({0.11, 0.39, 0.97, 0.30});
+
+ // ----------------------------------------------------------------------------
+ // Init of a Rips complex from points
+ // ----------------------------------------------------------------------------
+ double threshold = 1.0;
+ Rips_complex rips_complex_from_points(distances, threshold);
+
+ Simplex_tree stree;
+ rips_complex_from_points.create_complex(stree, 1);
+ // ----------------------------------------------------------------------------
+ // Display information about the one skeleton Rips complex
+ // ----------------------------------------------------------------------------
+ std::cout << "Rips complex is of dimension " << stree.dimension() <<
+ " - " << stree.num_simplices() << " simplices - " <<
+ stree.num_vertices() << " vertices." << std::endl;
+
+ std::cout << "Iterator on Rips complex simplices in the filtration order, with [filtration value]:" <<
+ std::endl;
+ for (auto f_simplex : stree.filtration_simplex_range()) {
+ std::cout << " ( ";
+ for (auto vertex : stree.simplex_vertex_range(f_simplex)) {
+ std::cout << vertex << " ";
+ }
+ std::cout << ") -> " << "[" << stree.filtration(f_simplex) << "] ";
+ std::cout << std::endl;
+ }
+
+ return 0;
+}