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-rw-r--r--example/Rips_complex/example_rips_complex_from_off_file.cpp71
1 files changed, 71 insertions, 0 deletions
diff --git a/example/Rips_complex/example_rips_complex_from_off_file.cpp b/example/Rips_complex/example_rips_complex_from_off_file.cpp
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+++ b/example/Rips_complex/example_rips_complex_from_off_file.cpp
@@ -0,0 +1,71 @@
+#include <gudhi/Rips_complex.h>
+// to construct Rips_complex from a OFF file of points
+#include <gudhi/Points_off_io.h>
+#include <gudhi/Simplex_tree.h>
+#include <gudhi/distance_functions.h>
+
+#include <iostream>
+#include <string>
+#include <vector>
+
+void usage(int nbArgs, char * const progName) {
+ std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n";
+ std::cerr << "Usage: " << progName << " filename.off threshold dim_max [ouput_file.txt]\n";
+ std::cerr << " i.e.: " << progName << " ../../data/points/alphacomplexdoc.off 60.0\n";
+ exit(-1); // ----- >>
+}
+
+int main(int argc, char **argv) {
+ if ((argc != 4) && (argc != 5)) usage(argc, (argv[0] - 1));
+
+ std::string off_file_name(argv[1]);
+ double threshold = atof(argv[2]);
+ int dim_max = atoi(argv[3]);
+
+ // Type definitions
+ using Point = std::vector<float>;
+ using Simplex_tree = Gudhi::Simplex_tree<>;
+ using Filtration_value = Simplex_tree::Filtration_value;
+ using Rips_complex = Gudhi::rips_complex::Rips_complex<Filtration_value>;
+
+ // ----------------------------------------------------------------------------
+ // Init of a Rips complex from an OFF file
+ // ----------------------------------------------------------------------------
+ Gudhi::Points_off_reader<Point> off_reader(off_file_name);
+ Rips_complex rips_complex_from_file(off_reader.get_point_cloud(), threshold, Gudhi::Euclidean_distance());
+
+ std::streambuf* streambufffer;
+ std::ofstream ouput_file_stream;
+
+ if (argc == 5) {
+ ouput_file_stream.open(std::string(argv[4]));
+ streambufffer = ouput_file_stream.rdbuf();
+ } else {
+ streambufffer = std::cout.rdbuf();
+ }
+
+ Simplex_tree stree;
+ rips_complex_from_file.create_complex(stree, dim_max);
+ std::ostream output_stream(streambufffer);
+
+ // ----------------------------------------------------------------------------
+ // Display information about the Rips complex
+ // ----------------------------------------------------------------------------
+ output_stream << "Rips complex is of dimension " << stree.dimension() <<
+ " - " << stree.num_simplices() << " simplices - " <<
+ stree.num_vertices() << " vertices." << std::endl;
+
+ output_stream << "Iterator on Rips complex simplices in the filtration order, with [filtration value]:" <<
+ std::endl;
+ for (auto f_simplex : stree.filtration_simplex_range()) {
+ output_stream << " ( ";
+ for (auto vertex : stree.simplex_vertex_range(f_simplex)) {
+ output_stream << vertex << " ";
+ }
+ output_stream << ") -> " << "[" << stree.filtration(f_simplex) << "] ";
+ output_stream << std::endl;
+ }
+
+ ouput_file_stream.close();
+ return 0;
+}