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-rw-r--r--example/Simplex_tree/CMakeLists.txt17
-rw-r--r--example/Simplex_tree/cech_complex_cgal_mini_sphere_3d.cpp221
-rw-r--r--example/Simplex_tree/example_alpha_shapes_3_simplex_tree_from_off_file.cpp2
-rw-r--r--example/Simplex_tree/graph_expansion_with_blocker.cpp77
-rw-r--r--example/Simplex_tree/mini_simplex_tree.cpp2
-rw-r--r--example/Simplex_tree/simple_simplex_tree.cpp95
6 files changed, 372 insertions, 42 deletions
diff --git a/example/Simplex_tree/CMakeLists.txt b/example/Simplex_tree/CMakeLists.txt
index e22cc92c..b33b2d05 100644
--- a/example/Simplex_tree/CMakeLists.txt
+++ b/example/Simplex_tree/CMakeLists.txt
@@ -35,4 +35,21 @@ if(GMP_FOUND AND CGAL_FOUND)
install(TARGETS Simplex_tree_example_alpha_shapes_3_from_off DESTINATION bin)
+ add_executable ( Simplex_tree_example_cech_complex_cgal_mini_sphere_3d cech_complex_cgal_mini_sphere_3d.cpp )
+ target_link_libraries(Simplex_tree_example_cech_complex_cgal_mini_sphere_3d ${Boost_PROGRAM_OPTIONS_LIBRARY} ${CGAL_LIBRARY})
+ if (TBB_FOUND)
+ target_link_libraries(Simplex_tree_example_cech_complex_cgal_mini_sphere_3d ${TBB_LIBRARIES})
+ endif()
+ add_test(NAME Simplex_tree_example_cech_complex_cgal_mini_sphere_3d COMMAND $<TARGET_FILE:Simplex_tree_example_cech_complex_cgal_mini_sphere_3d>
+ "${CMAKE_SOURCE_DIR}/data/points/tore3D_300.off" -r 0.3 -d 3)
+
+ install(TARGETS Simplex_tree_example_alpha_shapes_3_from_off DESTINATION bin)
endif()
+
+add_executable ( Simplex_tree_example_graph_expansion_with_blocker graph_expansion_with_blocker.cpp )
+if (TBB_FOUND)
+ target_link_libraries(Simplex_tree_example_graph_expansion_with_blocker ${TBB_LIBRARIES})
+endif()
+add_test(NAME Simplex_tree_example_graph_expansion_with_blocker COMMAND $<TARGET_FILE:Simplex_tree_example_graph_expansion_with_blocker>)
+
+install(TARGETS Simplex_tree_example_graph_expansion_with_blocker DESTINATION bin)
diff --git a/example/Simplex_tree/cech_complex_cgal_mini_sphere_3d.cpp b/example/Simplex_tree/cech_complex_cgal_mini_sphere_3d.cpp
new file mode 100644
index 00000000..9bd51106
--- /dev/null
+++ b/example/Simplex_tree/cech_complex_cgal_mini_sphere_3d.cpp
@@ -0,0 +1,221 @@
+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Clément Maria
+ *
+ * Copyright (C) 2014 INRIA Sophia Antipolis-Méditerranée (France)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <gudhi/graph_simplicial_complex.h>
+#include <gudhi/distance_functions.h>
+#include <gudhi/Simplex_tree.h>
+#include <gudhi/Points_off_io.h>
+
+#include <CGAL/Epick_d.h>
+#include <CGAL/Min_sphere_of_spheres_d.h>
+#include <CGAL/Min_sphere_of_points_d_traits_d.h>
+
+#include <boost/program_options.hpp>
+
+#include <string>
+#include <vector>
+#include <limits> // infinity
+#include <utility> // for pair
+#include <map>
+
+// -------------------------------------------------------------------------------
+// cech_complex_cgal_mini_sphere_3d is an example of each step that is required to
+// build a Cech over a Simplex_tree. Please refer to cech_persistence to see
+// how to do the same thing with the Cech_complex wrapper for less detailed
+// steps.
+// -------------------------------------------------------------------------------
+
+// Types definition
+using Simplex_tree = Gudhi::Simplex_tree<>;
+using Vertex_handle = Simplex_tree::Vertex_handle;
+using Simplex_handle = Simplex_tree::Simplex_handle;
+using Filtration_value = Simplex_tree::Filtration_value;
+using Siblings = Simplex_tree::Siblings;
+using Graph_t = boost::adjacency_list<boost::vecS, boost::vecS, boost::undirectedS,
+ boost::property<Gudhi::vertex_filtration_t, Filtration_value>,
+ boost::property<Gudhi::edge_filtration_t, Filtration_value> >;
+using Edge_t = std::pair<Vertex_handle, Vertex_handle>;
+
+using Kernel = CGAL::Epick_d<CGAL::Dimension_tag<3> >;
+using Point = Kernel::Point_d;
+using Traits = CGAL::Min_sphere_of_points_d_traits_d<Kernel, Filtration_value, 3>;
+using Min_sphere = CGAL::Min_sphere_of_spheres_d<Traits>;
+
+using Points_off_reader = Gudhi::Points_off_reader<Point>;
+
+class Cech_blocker {
+ public:
+ bool operator()(Simplex_handle sh) {
+ std::vector<Point> points;
+#if DEBUG_TRACES
+ std::cout << "Cech_blocker on [";
+#endif // DEBUG_TRACES
+ for (auto vertex : simplex_tree_.simplex_vertex_range(sh)) {
+ points.push_back(point_cloud_[vertex]);
+#if DEBUG_TRACES
+ std::cout << vertex << ", ";
+#endif // DEBUG_TRACES
+ }
+ Min_sphere ms(points.begin(), points.end());
+ Filtration_value radius = ms.radius();
+#if DEBUG_TRACES
+ std::cout << "] - radius = " << radius << " - returns " << (radius > threshold_) << std::endl;
+#endif // DEBUG_TRACES
+ simplex_tree_.assign_filtration(sh, radius);
+ return (radius > threshold_);
+ }
+ Cech_blocker(Simplex_tree& simplex_tree, Filtration_value threshold, const std::vector<Point>& point_cloud)
+ : simplex_tree_(simplex_tree), threshold_(threshold), point_cloud_(point_cloud) {}
+
+ private:
+ Simplex_tree simplex_tree_;
+ Filtration_value threshold_;
+ std::vector<Point> point_cloud_;
+};
+
+template <typename InputPointRange>
+Graph_t compute_proximity_graph(InputPointRange& points, Filtration_value threshold);
+
+void program_options(int argc, char* argv[], std::string& off_file_points, Filtration_value& threshold, int& dim_max);
+
+int main(int argc, char* argv[]) {
+ std::string off_file_points;
+ Filtration_value threshold;
+ int dim_max;
+
+ program_options(argc, argv, off_file_points, threshold, dim_max);
+
+ // Extract the points from the file filepoints
+ Points_off_reader off_reader(off_file_points);
+
+ // Compute the proximity graph of the points
+ Graph_t prox_graph = compute_proximity_graph(off_reader.get_point_cloud(), threshold);
+
+ // Min_sphere sph1(off_reader.get_point_cloud()[0], off_reader.get_point_cloud()[1], off_reader.get_point_cloud()[2]);
+ // Construct the Rips complex in a Simplex Tree
+ Simplex_tree st;
+ // insert the proximity graph in the simplex tree
+ st.insert_graph(prox_graph);
+ // expand the graph until dimension dim_max
+ st.expansion_with_blockers(dim_max, Cech_blocker(st, threshold, off_reader.get_point_cloud()));
+
+ std::cout << "The complex contains " << st.num_simplices() << " simplices \n";
+ std::cout << " and has dimension " << st.dimension() << " \n";
+
+ // Sort the simplices in the order of the filtration
+ st.initialize_filtration();
+
+#if DEBUG_TRACES
+ std::cout << "********************************************************************\n";
+ // Display the Simplex_tree - Can not be done in the middle of 2 inserts
+ std::cout << "* The complex contains " << st.num_simplices() << " simplices - dimension=" << st.dimension() << "\n";
+ std::cout << "* Iterator on Simplices in the filtration, with [filtration value]:\n";
+ for (auto f_simplex : st.filtration_simplex_range()) {
+ std::cout << " "
+ << "[" << st.filtration(f_simplex) << "] ";
+ for (auto vertex : st.simplex_vertex_range(f_simplex)) {
+ std::cout << static_cast<int>(vertex) << " ";
+ }
+ std::cout << std::endl;
+ }
+#endif // DEBUG_TRACES
+ return 0;
+}
+
+void program_options(int argc, char* argv[], std::string& off_file_points, Filtration_value& threshold, int& dim_max) {
+ namespace po = boost::program_options;
+ po::options_description hidden("Hidden options");
+ hidden.add_options()("input-file", po::value<std::string>(&off_file_points),
+ "Name of an OFF file containing a 3d point set.\n");
+
+ po::options_description visible("Allowed options", 100);
+ visible.add_options()("help,h", "produce help message")(
+ "max-edge-length,r",
+ po::value<Filtration_value>(&threshold)->default_value(std::numeric_limits<Filtration_value>::infinity()),
+ "Maximal length of an edge for the Cech complex construction.")(
+ "cpx-dimension,d", po::value<int>(&dim_max)->default_value(1),
+ "Maximal dimension of the Cech complex we want to compute.");
+
+ po::positional_options_description pos;
+ pos.add("input-file", 1);
+
+ po::options_description all;
+ all.add(visible).add(hidden);
+
+ po::variables_map vm;
+ po::store(po::command_line_parser(argc, argv).options(all).positional(pos).run(), vm);
+ po::notify(vm);
+
+ if (vm.count("help") || !vm.count("input-file")) {
+ std::cout << std::endl;
+ std::cout << "Construct a Cech complex defined on a set of input points.\n \n";
+
+ std::cout << "Usage: " << argv[0] << " [options] input-file" << std::endl << std::endl;
+ std::cout << visible << std::endl;
+ std::abort();
+ }
+}
+
+/** Output the proximity graph of the points.
+ *
+ * If points contains n elements, the proximity graph is the graph
+ * with n vertices, and an edge [u,v] iff the distance function between
+ * points u and v is smaller than threshold.
+ *
+ * The type PointCloud furnishes .begin() and .end() methods, that return
+ * iterators with value_type Point.
+ */
+template <typename InputPointRange>
+Graph_t compute_proximity_graph(InputPointRange& points, Filtration_value threshold) {
+ std::vector<Edge_t> edges;
+ std::vector<Filtration_value> edges_fil;
+
+ Kernel k;
+ Vertex_handle idx_u, idx_v;
+ Filtration_value fil;
+ idx_u = 0;
+ for (auto it_u = points.begin(); it_u != points.end(); ++it_u) {
+ idx_v = idx_u + 1;
+ for (auto it_v = it_u + 1; it_v != points.end(); ++it_v, ++idx_v) {
+ fil = k.squared_distance_d_object()(*it_u, *it_v);
+ // For Cech Complex, threshold is a radius (distance /2)
+ fil = std::sqrt(fil) / 2.;
+ if (fil <= threshold) {
+ edges.emplace_back(idx_u, idx_v);
+ edges_fil.push_back(fil);
+ }
+ }
+ ++idx_u;
+ }
+
+ Graph_t skel_graph(edges.begin(), edges.end(), edges_fil.begin(),
+ idx_u); // number of points labeled from 0 to idx_u-1
+
+ auto vertex_prop = boost::get(Gudhi::vertex_filtration_t(), skel_graph);
+
+ boost::graph_traits<Graph_t>::vertex_iterator vi, vi_end;
+ for (std::tie(vi, vi_end) = boost::vertices(skel_graph); vi != vi_end; ++vi) {
+ boost::put(vertex_prop, *vi, 0.);
+ }
+
+ return skel_graph;
+}
diff --git a/example/Simplex_tree/example_alpha_shapes_3_simplex_tree_from_off_file.cpp b/example/Simplex_tree/example_alpha_shapes_3_simplex_tree_from_off_file.cpp
index ff2eebcb..d8289ba9 100644
--- a/example/Simplex_tree/example_alpha_shapes_3_simplex_tree_from_off_file.cpp
+++ b/example/Simplex_tree/example_alpha_shapes_3_simplex_tree_from_off_file.cpp
@@ -28,6 +28,8 @@
#include <CGAL/Exact_predicates_inexact_constructions_kernel.h>
#include <CGAL/Delaunay_triangulation_3.h>
#include <CGAL/Alpha_shape_3.h>
+#include <CGAL/Alpha_shape_vertex_base_3.h>
+#include <CGAL/Alpha_shape_cell_base_3.h>
#include <CGAL/iterator.h>
#include <fstream>
diff --git a/example/Simplex_tree/graph_expansion_with_blocker.cpp b/example/Simplex_tree/graph_expansion_with_blocker.cpp
new file mode 100644
index 00000000..0d458cbd
--- /dev/null
+++ b/example/Simplex_tree/graph_expansion_with_blocker.cpp
@@ -0,0 +1,77 @@
+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Vincent Rouvreau
+ *
+ * Copyright (C) 2014
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <gudhi/Simplex_tree.h>
+
+#include <iostream>
+
+using Simplex_tree = Gudhi::Simplex_tree<>;
+using Simplex_handle = Simplex_tree::Simplex_handle;
+
+int main(int argc, char* const argv[]) {
+ // Construct the Simplex Tree with a 1-skeleton graph example
+ Simplex_tree simplexTree;
+
+ simplexTree.insert_simplex({0, 1}, 0.);
+ simplexTree.insert_simplex({0, 2}, 1.);
+ simplexTree.insert_simplex({0, 3}, 2.);
+ simplexTree.insert_simplex({1, 2}, 3.);
+ simplexTree.insert_simplex({1, 3}, 4.);
+ simplexTree.insert_simplex({2, 3}, 5.);
+ simplexTree.insert_simplex({2, 4}, 6.);
+ simplexTree.insert_simplex({3, 6}, 7.);
+ simplexTree.insert_simplex({4, 5}, 8.);
+ simplexTree.insert_simplex({4, 6}, 9.);
+ simplexTree.insert_simplex({5, 6}, 10.);
+ simplexTree.insert_simplex({6}, 10.);
+
+ simplexTree.expansion_with_blockers(3, [&](Simplex_handle sh) {
+ bool result = false;
+ std::cout << "Blocker on [";
+ // User can loop on the vertices from the given simplex_handle i.e.
+ for (auto vertex : simplexTree.simplex_vertex_range(sh)) {
+ // We block the expansion, if the vertex '6' is in the given list of vertices
+ if (vertex == 6) result = true;
+ std::cout << vertex << ", ";
+ }
+ std::cout << "] ( " << simplexTree.filtration(sh);
+ // User can re-assign a new filtration value directly in the blocker (default is the maximal value of boudaries)
+ simplexTree.assign_filtration(sh, simplexTree.filtration(sh) + 1.);
+
+ std::cout << " + 1. ) = " << result << std::endl;
+
+ return result;
+ });
+
+ std::cout << "********************************************************************\n";
+ std::cout << "* The complex contains " << simplexTree.num_simplices() << " simplices";
+ std::cout << " - dimension " << simplexTree.dimension() << "\n";
+ std::cout << "* Iterator on Simplices in the filtration, with [filtration value]:\n";
+ for (auto f_simplex : simplexTree.filtration_simplex_range()) {
+ std::cout << " "
+ << "[" << simplexTree.filtration(f_simplex) << "] ";
+ for (auto vertex : simplexTree.simplex_vertex_range(f_simplex)) std::cout << "(" << vertex << ")";
+ std::cout << std::endl;
+ }
+
+ return 0;
+}
diff --git a/example/Simplex_tree/mini_simplex_tree.cpp b/example/Simplex_tree/mini_simplex_tree.cpp
index ad99df23..19e45361 100644
--- a/example/Simplex_tree/mini_simplex_tree.cpp
+++ b/example/Simplex_tree/mini_simplex_tree.cpp
@@ -52,8 +52,6 @@ int main() {
auto edge03 = {0, 3};
st.insert_simplex_and_subfaces(triangle012);
st.insert_simplex_and_subfaces(edge03);
- // FIXME: Remove this line
- st.set_dimension(2);
auto edge02 = {0, 2};
ST::Simplex_handle e = st.find(edge02);
diff --git a/example/Simplex_tree/simple_simplex_tree.cpp b/example/Simplex_tree/simple_simplex_tree.cpp
index d8318f03..828977c2 100644
--- a/example/Simplex_tree/simple_simplex_tree.cpp
+++ b/example/Simplex_tree/simple_simplex_tree.cpp
@@ -30,10 +30,10 @@
using Simplex_tree = Gudhi::Simplex_tree<>;
using Vertex_handle = Simplex_tree::Vertex_handle;
using Filtration_value = Simplex_tree::Filtration_value;
-using typeVectorVertex = std::vector< Vertex_handle >;
-using typePairSimplexBool = std::pair< Simplex_tree::Simplex_handle, bool >;
+using typeVectorVertex = std::vector<Vertex_handle>;
+using typePairSimplexBool = std::pair<Simplex_tree::Simplex_handle, bool>;
-int main(int argc, char * const argv[]) {
+int main(int argc, char* const argv[]) {
const Filtration_value FIRST_FILTRATION_VALUE = 0.1;
const Filtration_value SECOND_FILTRATION_VALUE = 0.2;
const Filtration_value THIRD_FILTRATION_VALUE = 0.3;
@@ -54,7 +54,7 @@ int main(int argc, char * const argv[]) {
// ++ FIRST
std::cout << " * INSERT 0" << std::endl;
- typeVectorVertex firstSimplexVector = { 0 };
+ typeVectorVertex firstSimplexVector = {0};
typePairSimplexBool returnValue =
simplexTree.insert_simplex(firstSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
@@ -66,9 +66,8 @@ int main(int argc, char * const argv[]) {
// ++ SECOND
std::cout << " * INSERT 1" << std::endl;
- typeVectorVertex secondSimplexVector = { 1 };
- returnValue =
- simplexTree.insert_simplex(secondSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
+ typeVectorVertex secondSimplexVector = {1};
+ returnValue = simplexTree.insert_simplex(secondSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + 1 INSERTED" << std::endl;
@@ -78,9 +77,8 @@ int main(int argc, char * const argv[]) {
// ++ THIRD
std::cout << " * INSERT (0,1)" << std::endl;
- typeVectorVertex thirdSimplexVector = { 0, 1 };
- returnValue =
- simplexTree.insert_simplex(thirdSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
+ typeVectorVertex thirdSimplexVector = {0, 1};
+ returnValue = simplexTree.insert_simplex(thirdSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + (0,1) INSERTED" << std::endl;
@@ -90,9 +88,8 @@ int main(int argc, char * const argv[]) {
// ++ FOURTH
std::cout << " * INSERT 2" << std::endl;
- typeVectorVertex fourthSimplexVector = { 2 };
- returnValue =
- simplexTree.insert_simplex(fourthSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
+ typeVectorVertex fourthSimplexVector = {2};
+ returnValue = simplexTree.insert_simplex(fourthSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + 2 INSERTED" << std::endl;
@@ -102,9 +99,8 @@ int main(int argc, char * const argv[]) {
// ++ FIFTH
std::cout << " * INSERT (2,0)" << std::endl;
- typeVectorVertex fifthSimplexVector = { 2, 0 };
- returnValue =
- simplexTree.insert_simplex(fifthSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
+ typeVectorVertex fifthSimplexVector = {2, 0};
+ returnValue = simplexTree.insert_simplex(fifthSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + (2,0) INSERTED" << std::endl;
@@ -114,9 +110,8 @@ int main(int argc, char * const argv[]) {
// ++ SIXTH
std::cout << " * INSERT (2,1)" << std::endl;
- typeVectorVertex sixthSimplexVector = { 2, 1 };
- returnValue =
- simplexTree.insert_simplex(sixthSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
+ typeVectorVertex sixthSimplexVector = {2, 1};
+ returnValue = simplexTree.insert_simplex(sixthSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + (2,1) INSERTED" << std::endl;
@@ -126,9 +121,8 @@ int main(int argc, char * const argv[]) {
// ++ SEVENTH
std::cout << " * INSERT (2,1,0)" << std::endl;
- typeVectorVertex seventhSimplexVector = { 2, 1, 0 };
- returnValue =
- simplexTree.insert_simplex(seventhSimplexVector, Filtration_value(THIRD_FILTRATION_VALUE));
+ typeVectorVertex seventhSimplexVector = {2, 1, 0};
+ returnValue = simplexTree.insert_simplex(seventhSimplexVector, Filtration_value(THIRD_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + (2,1,0) INSERTED" << std::endl;
@@ -138,9 +132,8 @@ int main(int argc, char * const argv[]) {
// ++ EIGHTH
std::cout << " * INSERT 3" << std::endl;
- typeVectorVertex eighthSimplexVector = { 3 };
- returnValue =
- simplexTree.insert_simplex(eighthSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
+ typeVectorVertex eighthSimplexVector = {3};
+ returnValue = simplexTree.insert_simplex(eighthSimplexVector, Filtration_value(FIRST_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + 3 INSERTED" << std::endl;
@@ -150,9 +143,8 @@ int main(int argc, char * const argv[]) {
// ++ NINETH
std::cout << " * INSERT (3,0)" << std::endl;
- typeVectorVertex ninethSimplexVector = { 3, 0 };
- returnValue =
- simplexTree.insert_simplex(ninethSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
+ typeVectorVertex ninethSimplexVector = {3, 0};
+ returnValue = simplexTree.insert_simplex(ninethSimplexVector, Filtration_value(SECOND_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + (3,0) INSERTED" << std::endl;
@@ -162,7 +154,7 @@ int main(int argc, char * const argv[]) {
// ++ TENTH
std::cout << " * INSERT 0 (already inserted)" << std::endl;
- typeVectorVertex tenthSimplexVector = { 0 };
+ typeVectorVertex tenthSimplexVector = {0};
// With a different filtration value
returnValue = simplexTree.insert_simplex(tenthSimplexVector, Filtration_value(FOURTH_FILTRATION_VALUE));
@@ -174,9 +166,8 @@ int main(int argc, char * const argv[]) {
// ++ ELEVENTH
std::cout << " * INSERT (2,1,0) (already inserted)" << std::endl;
- typeVectorVertex eleventhSimplexVector = { 2, 1, 0 };
- returnValue =
- simplexTree.insert_simplex(eleventhSimplexVector, Filtration_value(FOURTH_FILTRATION_VALUE));
+ typeVectorVertex eleventhSimplexVector = {2, 1, 0};
+ returnValue = simplexTree.insert_simplex(eleventhSimplexVector, Filtration_value(FOURTH_FILTRATION_VALUE));
if (returnValue.second == true) {
std::cout << " + (2,1,0) INSERTED" << std::endl;
@@ -185,7 +176,6 @@ int main(int argc, char * const argv[]) {
}
// ++ GENERAL VARIABLE SET
- simplexTree.set_dimension(2); // Max dimension = 2 -> (2,1,0)
std::cout << "********************************************************************\n";
// Display the Simplex_tree - Can not be done in the middle of 2 inserts
@@ -193,10 +183,9 @@ int main(int argc, char * const argv[]) {
std::cout << " - dimension " << simplexTree.dimension() << "\n";
std::cout << "* Iterator on Simplices in the filtration, with [filtration value]:\n";
for (auto f_simplex : simplexTree.filtration_simplex_range()) {
- std::cout << " " << "[" << simplexTree.filtration(f_simplex) << "] ";
- for (auto vertex : simplexTree.simplex_vertex_range(f_simplex)) {
- std::cout << static_cast<int>(vertex) << " ";
- }
+ std::cout << " "
+ << "[" << simplexTree.filtration(f_simplex) << "] ";
+ for (auto vertex : simplexTree.simplex_vertex_range(f_simplex)) std::cout << "(" << vertex << ")";
std::cout << std::endl;
}
// [0.1] 0
@@ -219,7 +208,7 @@ int main(int argc, char * const argv[]) {
else
std::cout << "***- NO IT ISN'T\n";
- typeVectorVertex unknownSimplexVector = { 15 };
+ typeVectorVertex unknownSimplexVector = {15};
simplexFound = simplexTree.find(unknownSimplexVector);
std::cout << "**************IS THE SIMPLEX {15} IN THE SIMPLEX TREE ?\n";
if (simplexFound != simplexTree.null_simplex())
@@ -234,7 +223,7 @@ int main(int argc, char * const argv[]) {
else
std::cout << "***- NO IT ISN'T\n";
- typeVectorVertex otherSimplexVector = { 1, 15 };
+ typeVectorVertex otherSimplexVector = {1, 15};
simplexFound = simplexTree.find(otherSimplexVector);
std::cout << "**************IS THE SIMPLEX {15,1} IN THE SIMPLEX TREE ?\n";
if (simplexFound != simplexTree.null_simplex())
@@ -242,12 +231,38 @@ int main(int argc, char * const argv[]) {
else
std::cout << "***- NO IT ISN'T\n";
- typeVectorVertex invSimplexVector = { 1, 2, 0 };
+ typeVectorVertex invSimplexVector = {1, 2, 0};
simplexFound = simplexTree.find(invSimplexVector);
std::cout << "**************IS THE SIMPLEX {1,2,0} IN THE SIMPLEX TREE ?\n";
if (simplexFound != simplexTree.null_simplex())
std::cout << "***+ YES IT IS!\n";
else
std::cout << "***- NO IT ISN'T\n";
+
+ simplexFound = simplexTree.find({0, 1});
+ std::cout << "**************IS THE SIMPLEX {0,1} IN THE SIMPLEX TREE ?\n";
+ if (simplexFound != simplexTree.null_simplex())
+ std::cout << "***+ YES IT IS!\n";
+ else
+ std::cout << "***- NO IT ISN'T\n";
+
+ std::cout << "**************COFACES OF {0,1} IN CODIMENSION 1 ARE\n";
+ for (auto& simplex : simplexTree.cofaces_simplex_range(simplexTree.find({0, 1}), 1)) {
+ for (auto vertex : simplexTree.simplex_vertex_range(simplex)) std::cout << "(" << vertex << ")";
+ std::cout << std::endl;
+ }
+
+ std::cout << "**************STARS OF {0,1} ARE\n";
+ for (auto& simplex : simplexTree.star_simplex_range(simplexTree.find({0, 1}))) {
+ for (auto vertex : simplexTree.simplex_vertex_range(simplex)) std::cout << "(" << vertex << ")";
+ std::cout << std::endl;
+ }
+
+ std::cout << "**************BOUNDARIES OF {0,1,2} ARE\n";
+ for (auto& simplex : simplexTree.boundary_simplex_range(simplexTree.find({0, 1, 2}))) {
+ for (auto vertex : simplexTree.simplex_vertex_range(simplex)) std::cout << "(" << vertex << ")";
+ std::cout << std::endl;
+ }
+
return 0;
}