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-/* This file is part of the Gudhi Library. The Gudhi library
- * (Geometric Understanding in Higher Dimensions) is a generic C++
- * library for computational topology.
- *
- * Author(s): Vincent Rouvreau
- *
- * Copyright (C) 2018 Inria
- *
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- */
-
-#ifndef CECH_COMPLEX_H_
-#define CECH_COMPLEX_H_
-
-#include <gudhi/distance_functions.h> // for Gudhi::Minimal_enclosing_ball_radius
-#include <gudhi/graph_simplicial_complex.h> // for Gudhi::Proximity_graph
-#include <gudhi/Debug_utils.h> // for GUDHI_CHECK
-#include <gudhi/Cech_complex_blocker.h> // for Gudhi::cech_complex::Cech_blocker
-
-#include <iostream>
-#include <stdexcept> // for exception management
-#include <vector>
-
-namespace Gudhi {
-
-namespace cech_complex {
-
-/**
- * \class Cech_complex
- * \brief Cech complex data structure.
- *
- * \ingroup cech_complex
- *
- * \details
- * The data structure is a proximity graph, containing edges when the edge length is less or equal
- * to a given max_radius. Edge length is computed from `Gudhi::Minimal_enclosing_ball_radius` distance function.
- *
- * \tparam SimplicialComplexForProximityGraph furnishes `Vertex_handle` and `Filtration_value` type definition required
- * by `Gudhi::Proximity_graph`.
- *
- * \tparam ForwardPointRange must be a range for which `std::begin()` and `std::end()` methods return input
- * iterators on a point. `std::begin()` and `std::end()` methods are also required for a point.
- */
-template <typename SimplicialComplexForProximityGraph, typename ForwardPointRange>
-class Cech_complex {
- private:
- // Required by compute_proximity_graph
- using Vertex_handle = typename SimplicialComplexForProximityGraph::Vertex_handle;
- using Filtration_value = typename SimplicialComplexForProximityGraph::Filtration_value;
- using Proximity_graph = Gudhi::Proximity_graph<SimplicialComplexForProximityGraph>;
-
- // Retrieve Coordinate type from ForwardPointRange
- using Point_from_range_iterator = typename boost::range_const_iterator<ForwardPointRange>::type;
- using Point_from_range = typename std::iterator_traits<Point_from_range_iterator>::value_type;
- using Coordinate_iterator = typename boost::range_const_iterator<Point_from_range>::type;
- using Coordinate = typename std::iterator_traits<Coordinate_iterator>::value_type;
-
- public:
- // Point and Point_cloud type definition
- using Point = std::vector<Coordinate>;
- using Point_cloud = std::vector<Point>;
-
- public:
- /** \brief Cech_complex constructor from a list of points.
- *
- * @param[in] points Range of points.
- * @param[in] max_radius Maximal radius value.
- *
- * \tparam ForwardPointRange must be a range of Point. Point must be a range of <b>copyable</b> Cartesian coordinates.
- *
- */
- Cech_complex(const ForwardPointRange& points, Filtration_value max_radius) : max_radius_(max_radius) {
- // Point cloud deep copy
- point_cloud_.reserve(boost::size(points));
- for (auto&& point : points) point_cloud_.emplace_back(std::begin(point), std::end(point));
-
- cech_skeleton_graph_ = Gudhi::compute_proximity_graph<SimplicialComplexForProximityGraph>(
- point_cloud_, max_radius_, Gudhi::Minimal_enclosing_ball_radius());
- }
-
- /** \brief Initializes the simplicial complex from the proximity graph and expands it until a given maximal
- * dimension, using the Cech blocker oracle.
- *
- * @param[in] complex SimplicialComplexForCech to be created.
- * @param[in] dim_max graph expansion until this given maximal dimension.
- * @exception std::invalid_argument In debug mode, if `complex.num_vertices()` does not return 0.
- *
- */
- template <typename SimplicialComplexForCechComplex>
- void create_complex(SimplicialComplexForCechComplex& complex, int dim_max) {
- GUDHI_CHECK(complex.num_vertices() == 0,
- std::invalid_argument("Cech_complex::create_complex - simplicial complex is not empty"));
-
- // insert the proximity graph in the simplicial complex
- complex.insert_graph(cech_skeleton_graph_);
- // expand the graph until dimension dim_max
- complex.expansion_with_blockers(dim_max,
- Cech_blocker<SimplicialComplexForCechComplex, Cech_complex>(&complex, this));
- }
-
- /** @return max_radius value given at construction. */
- Filtration_value max_radius() const { return max_radius_; }
-
- /** @param[in] vertex Point position in the range.
- * @return The point.
- */
- const Point& get_point(Vertex_handle vertex) const { return point_cloud_[vertex]; }
-
- private:
- Proximity_graph cech_skeleton_graph_;
- Filtration_value max_radius_;
- Point_cloud point_cloud_;
-};
-
-} // namespace cech_complex
-
-} // namespace Gudhi
-
-#endif // CECH_COMPLEX_H_