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+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Clement Jamin
+ *
+ * Copyright (C) 2016 INRIA
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#ifndef TANGENTIAL_COMPLEX_UTILITIES_H_
+#define TANGENTIAL_COMPLEX_UTILITIES_H_
+
+#include <CGAL/Dimension.h>
+#include <CGAL/Combination_enumerator.h>
+#include <CGAL/IO/Triangulation_off_ostream.h>
+
+#include <boost/container/flat_set.hpp>
+
+#include <Eigen/Core>
+#include <Eigen/Eigen>
+
+#include <set>
+#include <vector>
+#include <array>
+#include <fstream>
+#include <atomic>
+#include <cmath> // for std::sqrt
+
+namespace Gudhi {
+namespace tangential_complex {
+namespace internal {
+
+// Provides copy constructors to std::atomic so that
+// it can be used in a vector
+template <typename T>
+struct Atomic_wrapper
+: public std::atomic<T> {
+ typedef std::atomic<T> Base;
+
+ Atomic_wrapper() { }
+
+ Atomic_wrapper(const T &t) : Base(t) { }
+
+ Atomic_wrapper(const std::atomic<T> &a) : Base(a.load()) { }
+
+ Atomic_wrapper(const Atomic_wrapper &other) : Base(other.load()) { }
+
+ Atomic_wrapper &operator=(const T &other) {
+ Base::store(other);
+ return *this;
+ }
+
+ Atomic_wrapper &operator=(const std::atomic<T> &other) {
+ Base::store(other.load());
+ return *this;
+ }
+
+ Atomic_wrapper &operator=(const Atomic_wrapper &other) {
+ Base::store(other.load());
+ return *this;
+ }
+};
+
+// Modifies v in-place
+template <typename K>
+typename K::Vector_d& normalize_vector(typename K::Vector_d& v,
+ K const& k) {
+ v = k.scaled_vector_d_object()(
+ v, typename K::FT(1) / std::sqrt(k.squared_length_d_object()(v)));
+ return v;
+}
+
+template<typename Kernel>
+struct Basis {
+ typedef typename Kernel::FT FT;
+ typedef typename Kernel::Point_d Point;
+ typedef typename Kernel::Vector_d Vector;
+ typedef typename std::vector<Vector>::const_iterator const_iterator;
+
+ std::size_t m_origin;
+ std::vector<Vector> m_vectors;
+
+ std::size_t origin() const {
+ return m_origin;
+ }
+
+ void set_origin(std::size_t o) {
+ m_origin = o;
+ }
+
+ const_iterator begin() const {
+ return m_vectors.begin();
+ }
+
+ const_iterator end() const {
+ return m_vectors.end();
+ }
+
+ std::size_t size() const {
+ return m_vectors.size();
+ }
+
+ Vector& operator[](const std::size_t i) {
+ return m_vectors[i];
+ }
+
+ const Vector& operator[](const std::size_t i) const {
+ return m_vectors[i];
+ }
+
+ void push_back(const Vector& v) {
+ m_vectors.push_back(v);
+ }
+
+ void reserve(const std::size_t s) {
+ m_vectors.reserve(s);
+ }
+
+ Basis() { }
+
+ Basis(std::size_t origin) : m_origin(origin) { }
+
+ Basis(std::size_t origin, const std::vector<Vector>& vectors)
+ : m_origin(origin), m_vectors(vectors) { }
+
+ int dimension() const {
+ return static_cast<int> (m_vectors.size());
+ }
+};
+
+// 1st line: number of points
+// Then one point per line
+template <typename Kernel, typename Point_range>
+std::ostream &export_point_set(
+ Kernel const& k,
+ Point_range const& points,
+ std::ostream & os,
+ const char *coord_separator = " ") {
+ // Kernel functors
+ typename Kernel::Construct_cartesian_const_iterator_d ccci =
+ k.construct_cartesian_const_iterator_d_object();
+
+ os << points.size() << "\n";
+
+ typename Point_range::const_iterator it_p = points.begin();
+ typename Point_range::const_iterator it_p_end = points.end();
+ // For each point p
+ for (; it_p != it_p_end; ++it_p) {
+ for (auto it = ccci(*it_p); it != ccci(*it_p, 0); ++it)
+ os << CGAL::to_double(*it) << coord_separator;
+
+ os << "\n";
+ }
+
+ return os;
+}
+
+// Compute all the k-combinations of elements
+// Output_iterator::value_type must be
+// boost::container::flat_set<std::size_t>
+template <typename Elements_container, typename Output_iterator>
+void combinations(const Elements_container elements, int k,
+ Output_iterator combinations) {
+ std::size_t n = elements.size();
+ std::vector<bool> booleans(n, false);
+ std::fill(booleans.begin() + n - k, booleans.end(), true);
+ do {
+ boost::container::flat_set<std::size_t> combination;
+ typename Elements_container::const_iterator it_elt = elements.begin();
+ for (std::size_t i = 0; i < n; ++i, ++it_elt) {
+ if (booleans[i])
+ combination.insert(*it_elt);
+ }
+ *combinations++ = combination;
+ } while (std::next_permutation(booleans.begin(), booleans.end()));
+}
+
+} // namespace internal
+} // namespace tangential_complex
+} // namespace Gudhi
+
+#endif // TANGENTIAL_COMPLEX_UTILITIES_H_