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-rw-r--r--src/Alpha_complex/example/Weighted_alpha_complex_3d_from_points.cpp52
1 files changed, 52 insertions, 0 deletions
diff --git a/src/Alpha_complex/example/Weighted_alpha_complex_3d_from_points.cpp b/src/Alpha_complex/example/Weighted_alpha_complex_3d_from_points.cpp
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+++ b/src/Alpha_complex/example/Weighted_alpha_complex_3d_from_points.cpp
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+#include <gudhi/Alpha_complex_3d.h>
+// to construct a simplex_tree from alpha complex
+#include <gudhi/Simplex_tree.h>
+
+#include <iostream>
+#include <string>
+#include <vector>
+#include <limits> // for numeric limits
+
+// Complexity = FAST, weighted = true, periodic = false
+using Weighted_alpha_complex_3d =
+ Gudhi::alpha_complex::Alpha_complex_3d<Gudhi::alpha_complex::complexity::SAFE, true, false>;
+using Point = Weighted_alpha_complex_3d::Point_3;
+using Weighted_point = Weighted_alpha_complex_3d::Weighted_point_3;
+
+int main(int argc, char **argv) {
+ // ----------------------------------------------------------------------------
+ // Init of a list of points and weights from a small molecule
+ // ----------------------------------------------------------------------------
+ std::vector<Weighted_point> weighted_points;
+ weighted_points.push_back(Weighted_point(Point(1, -1, -1), 4.));
+ weighted_points.push_back(Weighted_point(Point(-1, 1, -1), 4.));
+ weighted_points.push_back(Weighted_point(Point(-1, -1, 1), 4.));
+ weighted_points.push_back(Weighted_point(Point(1, 1, 1), 4.));
+ weighted_points.push_back(Weighted_point(Point(2, 2, 2), 1.));
+
+ // ----------------------------------------------------------------------------
+ // Init of an alpha complex from the list of points
+ // ----------------------------------------------------------------------------
+ Weighted_alpha_complex_3d alpha_complex_from_points(weighted_points);
+
+ Gudhi::Simplex_tree<> simplex;
+ if (alpha_complex_from_points.create_complex(simplex)) {
+ // ----------------------------------------------------------------------------
+ // Display information about the alpha complex
+ // ----------------------------------------------------------------------------
+ std::cout << "Alpha complex is of dimension " << simplex.dimension() << " - " << simplex.num_simplices()
+ << " simplices - " << simplex.num_vertices() << " vertices." << std::endl;
+
+ std::cout << "Iterator on alpha complex simplices in the filtration order, with [filtration value]:" << std::endl;
+ for (auto f_simplex : simplex.filtration_simplex_range()) {
+ std::cout << " ( ";
+ for (auto vertex : simplex.simplex_vertex_range(f_simplex)) {
+ std::cout << vertex << " ";
+ }
+ std::cout << ") -> "
+ << "[" << simplex.filtration(f_simplex) << "] ";
+ std::cout << std::endl;
+ }
+ }
+ return 0;
+}