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+/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+ * Author(s): Pawel Dlotko
+ *
+ * Copyright (C) 2015 Inria
+ *
+ * Modification(s):
+ * - YYYY/MM Author: Description of the modification
+ */
+
+#include <gudhi/reader_utils.h>
+#include <gudhi/Bitmap_cubical_complex.h>
+#include <gudhi/Bitmap_cubical_complex_periodic_boundary_conditions_base.h>
+#include <gudhi/Persistent_cohomology.h>
+
+// standard stuff
+#include <iostream>
+#include <sstream>
+#include <vector>
+#include <string>
+
+int main(int argc, char** argv) {
+ std::cout
+ << "This program computes persistent homology, by using "
+ << "Bitmap_cubical_complex_periodic_boundary_conditions class, of cubical complexes provided in text files in "
+ << "Perseus style (the only numbered in the first line is a dimension D of a bitmap. In the lines I between 2 "
+ << "and D+1 there are numbers of top dimensional cells in the direction I. Let N denote product of the numbers "
+ << "in the lines between 2 and D. In the lines D+2 to D+2+N there are filtrations of top dimensional cells. We "
+ << "assume that the cells are in the lexicographical order. See CubicalOneSphere.txt or CubicalTwoSphere.txt for"
+ << " example.\n"
+ << std::endl;
+
+ if (argc != 2) {
+ std::cerr << "Wrong number of parameters. Please provide the name of a file with a Perseus style bitmap at "
+ << "the input. The program will now terminate.\n";
+ return 1;
+ }
+
+ typedef Gudhi::cubical_complex::Bitmap_cubical_complex_periodic_boundary_conditions_base<double> Bitmap_base;
+ typedef Gudhi::cubical_complex::Bitmap_cubical_complex<Bitmap_base> Bitmap_cubical_complex;
+
+ Bitmap_cubical_complex b(argv[1]);
+
+ typedef Gudhi::persistent_cohomology::Field_Zp Field_Zp;
+ typedef Gudhi::persistent_cohomology::Persistent_cohomology<Bitmap_cubical_complex, Field_Zp> Persistent_cohomology;
+ // Compute the persistence diagram of the complex
+ Persistent_cohomology pcoh(b, true);
+
+ int p = 11;
+ double min_persistence = 0;
+ pcoh.init_coefficients(p); // initializes the coefficient field for homology
+ pcoh.compute_persistent_cohomology(min_persistence);
+
+ std::string output_file_name(argv[1]);
+ output_file_name += "_persistence";
+
+ std::size_t last_in_path = output_file_name.find_last_of("/\\");
+
+ if (last_in_path != std::string::npos) {
+ output_file_name = output_file_name.substr(last_in_path + 1);
+ }
+
+ std::ofstream out(output_file_name.c_str());
+ pcoh.output_diagram(out);
+ out.close();
+
+ std::cout << "Result in file: " << output_file_name << "\n";
+
+ return 0;
+}