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-rw-r--r--src/CMakeLists.txt100
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diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
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+cmake_minimum_required(VERSION 3.1)
+
+project(GUDHI)
+
+include(CMakeGUDHIVersion.txt)
+
+list(APPEND CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake/modules/")
+
+set(GUDHI_MODULES "" CACHE INTERNAL "GUDHI_MODULES")
+set(GUDHI_MISSING_MODULES "" CACHE INTERNAL "GUDHI_MISSING_MODULES")
+
+# This variable is used by Cython CMakeLists.txt and by GUDHI_third_party_libraries to know its path
+set(GUDHI_PYTHON_PATH "python")
+
+# For third parties libraries management - To be done last as CGAL updates CMAKE_MODULE_PATH
+include(GUDHI_third_party_libraries NO_POLICY_SCOPE)
+
+include(GUDHI_compilation_flags)
+
+# Add your new module in the list, order is not important
+include(GUDHI_modules)
+
+add_gudhi_module(common)
+add_gudhi_module(Alpha_complex)
+add_gudhi_module(Bitmap_cubical_complex)
+add_gudhi_module(Bottleneck_distance)
+add_gudhi_module(Cech_complex)
+add_gudhi_module(Contraction)
+add_gudhi_module(Hasse_complex)
+add_gudhi_module(Persistence_representations)
+add_gudhi_module(Persistent_cohomology)
+add_gudhi_module(Rips_complex)
+add_gudhi_module(Simplex_tree)
+add_gudhi_module(Skeleton_blocker)
+add_gudhi_module(Spatial_searching)
+add_gudhi_module(Subsampling)
+add_gudhi_module(Tangential_complex)
+add_gudhi_module(Toplex_map)
+add_gudhi_module(Witness_complex)
+add_gudhi_module(Nerve_GIC)
+
+# For "make doxygen" - Requires GUDHI_USER_VERSION_DIR to be set
+set(GUDHI_USER_VERSION_DIR ${CMAKE_SOURCE_DIR})
+include(GUDHI_doxygen_target)
+
+#---------------------------------------------------------------------------------------
+# Gudhi compilation part
+include_directories(include)
+
+# Include module CMake subdirectories
+# GUDHI_SUB_DIRECTORIES is managed in CMAKE_MODULE_PATH/GUDHI_modules.cmake
+foreach(GUDHI_MODULE ${GUDHI_MODULES})
+ foreach(GUDHI_SUB_DIRECTORY ${GUDHI_SUB_DIRECTORIES})
+ if(EXISTS ${CMAKE_SOURCE_DIR}/${GUDHI_SUB_DIRECTORY}/${GUDHI_MODULE}/CMakeLists.txt)
+ add_subdirectory(${CMAKE_SOURCE_DIR}/${GUDHI_SUB_DIRECTORY}/${GUDHI_MODULE}/)
+ endif()
+ endforeach()
+endforeach()
+
+add_subdirectory(GudhUI)
+
+if (WITH_GUDHI_PYTHON)
+ # specific for cython module
+ add_subdirectory(${GUDHI_PYTHON_PATH})
+else()
+ message("++ Python module will not be compiled because WITH_GUDHI_PYTHON is set to OFF")
+ set(GUDHI_MISSING_MODULES ${GUDHI_MISSING_MODULES} "python")
+endif()
+
+message("++ GUDHI_MODULES list is:\"${GUDHI_MODULES}\"")
+message("++ GUDHI_MISSING_MODULES list is:\"${GUDHI_MISSING_MODULES}\"")
+
+#---------------------------------------------------------------------------------------
+
+#---------------------------------------------------------------------------------------
+# GUDHIConfig.cmake
+# Export the package for use from the build-tree
+# (this registers the build-tree with a global CMake-registry)
+export(PACKAGE GUDHI)
+
+message("++ make install will install ${PROJECT_NAME} in the following directory : ${CMAKE_INSTALL_PREFIX}")
+# Create the GUDHIConfig.cmake and GUDHIConfigVersion files
+set(CONF_INCLUDE_DIRS "${CMAKE_SOURCE_DIR}/include;${CMAKE_INSTALL_PREFIX}/include")
+configure_file(GUDHIConfig.cmake.in "${PROJECT_BINARY_DIR}/GUDHIConfig.cmake" @ONLY)
+configure_file(GUDHIConfigVersion.cmake.in "${PROJECT_BINARY_DIR}/GUDHIConfigVersion.cmake" @ONLY)
+
+#---------------------------------------------------------------------------------------
+
+#---------------------------------------------------------------------------------------
+# Gudhi installation part
+
+# Install the GUDHIConfig.cmake and GUDHIConfigVersion.cmake
+install(FILES
+ "${PROJECT_BINARY_DIR}/GUDHIConfig.cmake"
+ "${PROJECT_BINARY_DIR}/GUDHIConfigVersion.cmake"
+ DESTINATION share/gudhi)
+
+# install the include file on "make install"
+install(DIRECTORY include/gudhi DESTINATION include)
+#---------------------------------------------------------------------------------------