summaryrefslogtreecommitdiff
path: root/src/GudhUI/utils/Furthest_point_epsilon_net.h
diff options
context:
space:
mode:
Diffstat (limited to 'src/GudhUI/utils/Furthest_point_epsilon_net.h')
-rw-r--r--src/GudhUI/utils/Furthest_point_epsilon_net.h119
1 files changed, 119 insertions, 0 deletions
diff --git a/src/GudhUI/utils/Furthest_point_epsilon_net.h b/src/GudhUI/utils/Furthest_point_epsilon_net.h
new file mode 100644
index 00000000..6eb71071
--- /dev/null
+++ b/src/GudhUI/utils/Furthest_point_epsilon_net.h
@@ -0,0 +1,119 @@
+/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+ * Author(s): David Salinas
+ *
+ * Copyright (C) 2014 Inria
+ *
+ * Modification(s):
+ * - YYYY/MM Author: Description of the modification
+ */
+
+#ifndef UTILS_FURTHEST_POINT_EPSILON_NET_H_
+#define UTILS_FURTHEST_POINT_EPSILON_NET_H_
+
+#include <vector>
+#include <algorithm> // for sort
+
+#include "utils/UI_utils.h"
+
+/**
+ * Computes an epsilon net with furthest point strategy.
+ */
+template<typename SkBlComplex> class Furthest_point_epsilon_net {
+ private:
+ SkBlComplex& complex_;
+ typedef typename SkBlComplex::Vertex_handle Vertex_handle;
+ typedef typename SkBlComplex::Edge_handle Edge_handle;
+
+ /**
+ * Let V be the set of vertices.
+ * Initially v0 is one arbitrarly vertex and the set V0 is {v0}.
+ * Then Vk is computed as follows.
+ * First we compute the vertex pk that is the furthest from Vk
+ * then Vk = Vk \cup pk.
+ * The radius of pk is its distance to Vk and its meeting vertex
+ * is the vertex of Vk for which this distance is achieved.
+ */
+ struct Net_filtration_vertex {
+ Vertex_handle vertex_handle;
+ Vertex_handle meeting_vertex;
+ double radius;
+
+ Net_filtration_vertex(Vertex_handle vertex_handle_,
+ Vertex_handle meeting_vertex_,
+ double radius_) :
+ vertex_handle(vertex_handle_), meeting_vertex(meeting_vertex_), radius(radius_) { }
+
+ bool operator<(const Net_filtration_vertex& other) const {
+ return radius < other.radius;
+ }
+ };
+
+ public:
+ std::vector<Net_filtration_vertex> net_filtration_;
+
+ /**
+ * @brief Modify complex to be the expansion of the k-nearest neighbor
+ * symetric graph.
+ */
+ Furthest_point_epsilon_net(SkBlComplex& complex) :
+ complex_(complex) {
+ if (!complex.empty()) {
+ init_filtration();
+ for (std::size_t k = 2; k < net_filtration_.size(); ++k) {
+ update_radius_value(k);
+ }
+ }
+ }
+
+ // xxx does not work if complex not full
+
+ double radius(Vertex_handle v) {
+ return net_filtration_[v.vertex].radius;
+ }
+
+ private:
+ void init_filtration() {
+ Vertex_handle v0 = *(complex_.vertex_range().begin());
+ net_filtration_.reserve(complex_.num_vertices());
+ for (auto v : complex_.vertex_range()) {
+ if (v != v0)
+ net_filtration_.push_back(Net_filtration_vertex(v,
+ Vertex_handle(-1),
+ squared_eucl_distance(v, v0)));
+ }
+ net_filtration_.push_back(Net_filtration_vertex(v0, Vertex_handle(-1), 1e10));
+ auto n = net_filtration_.size();
+ sort_filtration(n - 1);
+ }
+
+ void update_radius_value(int k) {
+ int n = net_filtration_.size();
+ int index_to_update = n - k;
+ for (int i = 0; i < index_to_update; ++i) {
+ net_filtration_[i].radius = (std::min)(net_filtration_[i].radius,
+ squared_eucl_distance(net_filtration_[i].vertex_handle,
+ net_filtration_[index_to_update].vertex_handle));
+ }
+ sort_filtration(n - k);
+ }
+
+ /**
+ * sort all i first elements.
+ */
+ void sort_filtration(int i) {
+ std::sort(net_filtration_.begin(), net_filtration_.begin() + i);
+ }
+
+ double squared_eucl_distance(Vertex_handle v1, Vertex_handle v2) const {
+ return std::sqrt(Geometry_trait::Squared_distance_d()(complex_.point(v1), complex_.point(v2)));
+ }
+
+ void print_filtration() const {
+ for (auto v : net_filtration_) {
+ std::cerr << "v=" << v.vertex_handle << "-> d=" << v.radius << std::endl;
+ }
+ }
+};
+
+#endif // UTILS_FURTHEST_POINT_EPSILON_NET_H_