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+/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+ * Author(s): David Salinas
+ *
+ * Copyright (C) 2014 Inria
+ *
+ * Modification(s):
+ * - YYYY/MM Author: Description of the modification
+ */
+
+#ifndef UTILS_K_NEAREST_BUILDER_H_
+#define UTILS_K_NEAREST_BUILDER_H_
+
+#include <CGAL/Euclidean_distance.h>
+#include <CGAL/Orthogonal_k_neighbor_search.h>
+#include <CGAL/Search_traits_d.h>
+#include <CGAL/Search_traits_adapter.h>
+#include <CGAL/property_map.h>
+
+#include <unordered_map>
+#include <list>
+#include <utility>
+
+#include "utils/UI_utils.h"
+#include "model/Complex_typedefs.h"
+
+template<typename SkBlComplex> class K_nearest_builder {
+ private:
+ typedef Geometry_trait Kernel;
+ typedef Point Point_d;
+ typedef std::pair<Point_d, unsigned> Point_d_with_id;
+ typedef CGAL::Search_traits_d<Kernel> Traits_base;
+ typedef CGAL::Search_traits_adapter<Point_d_with_id, CGAL::First_of_pair_property_map<Point_d_with_id>,
+ Traits_base> Traits;
+ typedef CGAL::Orthogonal_k_neighbor_search<Traits> Neighbor_search;
+ typedef Neighbor_search::Tree Tree;
+ typedef Neighbor_search::Distance Distance;
+
+ SkBlComplex& complex_;
+
+ public:
+ /**
+ * @brief Modify complex to be the expansion of the k-nearest neighbor
+ * symetric graph.
+ */
+ K_nearest_builder(SkBlComplex& complex, unsigned k) : complex_(complex) {
+ complex.keep_only_vertices();
+ compute_edges(k);
+ }
+
+ private:
+ double squared_eucl_distance(const Point& p1, const Point& p2) const {
+ return Geometry_trait::Squared_distance_d()(p1, p2);
+ }
+
+ void compute_edges(unsigned k) {
+ std::list<Point_d_with_id> points_with_id;
+ for (auto v : complex_.vertex_range()) {
+ Point_d_with_id point_v(complex_.point(v), v.vertex);
+ points_with_id.push_back(point_v);
+ }
+
+ Tree tree(points_with_id.begin(), points_with_id.end());
+
+ typedef typename SkBlComplex::Vertex_handle Vertex_handle;
+ for (auto p : complex_.vertex_range()) {
+ Neighbor_search search(tree, complex_.point(p), k + 1);
+ for (auto it = ++search.begin(); it != search.end(); ++it) {
+ Vertex_handle q(std::get<1>(it->first));
+ if (p != q && complex_.contains_vertex(p) && complex_.contains_vertex(q))
+ complex_.add_edge_without_blockers(p, q);
+ }
+ }
+ }
+};
+
+#endif // UTILS_K_NEAREST_BUILDER_H_