summaryrefslogtreecommitdiff
path: root/src/Gudhi_stat/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp
diff options
context:
space:
mode:
Diffstat (limited to 'src/Gudhi_stat/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp')
-rw-r--r--src/Gudhi_stat/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp112
1 files changed, 112 insertions, 0 deletions
diff --git a/src/Gudhi_stat/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp b/src/Gudhi_stat/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp
new file mode 100644
index 00000000..85954cb2
--- /dev/null
+++ b/src/Gudhi_stat/utilities/persistence_landscapes/compute_distance_of_landscapes.cpp
@@ -0,0 +1,112 @@
+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Pawel Dlotko
+ *
+ * Copyright (C) 2015 INRIA (France)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <gudhi/Persistence_landscape.h>
+
+
+
+using namespace Gudhi;
+using namespace Gudhi::Persistence_representations;
+
+#include <iostream>
+#include <sstream>
+
+
+int main( int argc , char** argv )
+{
+ std::cout << "This program compute distance of persistence landscapes stored in a file (the file needs to be created beforehand). \n";
+ std::cout << "The first parameter of a program is an interger p. The program compute L^p distance of the given landscapes. For L^infty distance choose p = -1. \n";
+ std::cout << "The remaining parameters of this programs are names of files with persistence landscapes.";
+
+ if ( argc < 3 )
+ {
+ std::cout << "Wrong number of parameters, the program will now terminate \n";
+ return 1;
+ }
+
+ int pp = atoi( argv[1] );
+ double p = std::numeric_limits<double>::max();
+ if ( pp != -1 )
+ {
+ p = pp;
+ }
+
+
+ std::vector< const char* > filenames;
+ for ( int i = 2 ; i < argc ; ++i )
+ {
+ filenames.push_back( argv[i] );
+ }
+ std::vector< Persistence_landscape > landscaspes;
+ landscaspes.reserve( filenames.size() );
+ for ( size_t file_no = 0 ; file_no != filenames.size() ; ++file_no )
+ {
+ std::cout << "Loading persistence landscape from a file : " << filenames[file_no] << std::endl;
+ Persistence_landscape l;
+ l.load_landscape_from_file( filenames[file_no] );
+ landscaspes.push_back( l );
+ }
+
+ //and now we will compute the scalar product of landscapes.
+
+ //first we prepare an array:
+ std::vector< std::vector< double > > distance( filenames.size() );
+ for ( size_t i = 0 ; i != filenames.size() ; ++i )
+ {
+ std::vector< double > v( filenames.size() , 0 );
+ distance[i] = v;
+ }
+
+ //and now we can compute the distances:
+ for ( size_t i = 0 ; i != landscaspes.size() ; ++i )
+ {
+ for ( size_t j = i ; j != landscaspes.size() ; ++j )
+ {
+ distance[i][j] = distance[j][i] = compute_distance_of_landscapes( landscaspes[i], landscaspes[j] , p ) ;
+
+ }
+ }
+
+ //and now output the result to the screen and a file:
+ std::ofstream out;
+ out.open( "distance" );
+ for ( size_t i = 0 ; i != distance.size() ; ++i )
+ {
+ for ( size_t j = 0 ; j != distance.size() ; ++j )
+ {
+ std::cout << distance[i][j] << " ";
+ out << distance[i][j] << " ";
+ }
+ std::cout << std::endl;
+ out << std::endl;
+ }
+ out.close();
+
+ return 0;
+}
+
+
+
+
+
+
+