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Diffstat (limited to 'src/Nerve_GIC/example/CoordGIC.cpp')
-rw-r--r-- | src/Nerve_GIC/example/CoordGIC.cpp | 84 |
1 files changed, 84 insertions, 0 deletions
diff --git a/src/Nerve_GIC/example/CoordGIC.cpp b/src/Nerve_GIC/example/CoordGIC.cpp new file mode 100644 index 00000000..fd9c224a --- /dev/null +++ b/src/Nerve_GIC/example/CoordGIC.cpp @@ -0,0 +1,84 @@ +/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT. + * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details. + * Author(s): Mathieu Carrière + * + * Copyright (C) 2017 Inria + * + * Modification(s): + * - YYYY/MM Author: Description of the modification + */ + +#include <gudhi/GIC.h> + +#include <string> +#include <vector> + +void usage(int nbArgs, char *const progName) { + std::cerr << "Error: Number of arguments (" << nbArgs << ") is not correct\n"; + std::cerr << "Usage: " << progName << " filename.off coordinate [-v] \n"; + std::cerr << " i.e.: " << progName << " ../../data/points/human.off 2 -v \n"; + exit(-1); // ----- >> +} + +int main(int argc, char **argv) { + if ((argc != 3) && (argc != 4)) usage(argc, argv[0]); + + using Point = std::vector<float>; + + std::string off_file_name(argv[1]); + int coord = atoi(argv[2]); + bool verb = 0; + if (argc == 4) verb = 1; + + // ----------------------------------------- + // Init of a functional GIC from an OFF file + // ----------------------------------------- + + Gudhi::cover_complex::Cover_complex<Point> GIC; + GIC.set_verbose(verb); + + bool check = GIC.read_point_cloud(off_file_name); + + if (!check) { + std::cout << "Incorrect OFF file." << std::endl; + } else { + GIC.set_type("GIC"); + + GIC.set_color_from_coordinate(coord); + GIC.set_function_from_coordinate(coord); + + GIC.set_graph_from_automatic_rips(Gudhi::Euclidean_distance()); + GIC.set_automatic_resolution(); + GIC.set_gain(); + GIC.set_cover_from_function(); + + GIC.find_simplices(); + + GIC.compute_distribution(10); + GIC.compute_p_value(); + + GIC.plot_DOT(); + + Gudhi::Simplex_tree<> stree; + GIC.create_complex(stree); + + // -------------------------------------------- + // Display information about the functional GIC + // -------------------------------------------- + + if (verb) { + std::cout << "Coordinate GIC is of dimension " << stree.dimension() << " - " << stree.num_simplices() + << " simplices - " << stree.num_vertices() << " vertices." << std::endl; + + std::cout << "Iterator on coordinate GIC simplices" << std::endl; + for (auto f_simplex : stree.filtration_simplex_range()) { + for (auto vertex : stree.simplex_vertex_range(f_simplex)) { + std::cout << vertex << " "; + } + std::cout << std::endl; + } + } + } + + return 0; +} |