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-rwxr-xr-xsrc/Nerve_GIC/example/KeplerMapperVisuFromTxtFile.py72
1 files changed, 0 insertions, 72 deletions
diff --git a/src/Nerve_GIC/example/KeplerMapperVisuFromTxtFile.py b/src/Nerve_GIC/example/KeplerMapperVisuFromTxtFile.py
deleted file mode 100755
index d2897774..00000000
--- a/src/Nerve_GIC/example/KeplerMapperVisuFromTxtFile.py
+++ /dev/null
@@ -1,72 +0,0 @@
-#!/usr/bin/env python
-
-import km
-import numpy as np
-from collections import defaultdict
-
-"""This file is part of the Gudhi Library. The Gudhi library
- (Geometric Understanding in Higher Dimensions) is a generic C++
- library for computational topology.
-
- Author(s): Mathieu Carriere
-
- Copyright (C) 2017 INRIA
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
-"""
-
-__author__ = "Mathieu Carriere"
-__copyright__ = "Copyright (C) 2017 INRIA"
-__license__ = "GPL v3"
-
-network = {}
-mapper = km.KeplerMapper(verbose=0)
-data = np.zeros((3,3))
-projected_data = mapper.fit_transform( data, projection="sum", scaler=None )
-
-f = open('SC.txt','r')
-nodes = defaultdict(list)
-links = defaultdict(list)
-custom = defaultdict(list)
-
-dat = f.readline()
-lens = f.readline()
-color = f.readline();
-param = [float(i) for i in f.readline().split(" ")]
-
-nums = [int(i) for i in f.readline().split(" ")]
-num_nodes = nums[0]
-num_edges = nums[1]
-
-for i in range(0,num_nodes):
- point = [float(j) for j in f.readline().split(" ")]
- nodes[ str(int(point[0])) ] = [ int(point[0]), point[1], int(point[2]) ]
- links[ str(int(point[0])) ] = []
- custom[ int(point[0]) ] = point[1]
-
-m = min([custom[i] for i in range(0,num_nodes)])
-M = max([custom[i] for i in range(0,num_nodes)])
-
-for i in range(0,num_edges):
- edge = [int(j) for j in f.readline().split(" ")]
- links[ str(edge[0]) ].append( str(edge[1]) )
- links[ str(edge[1]) ].append( str(edge[0]) )
-
-network["nodes"] = nodes
-network["links"] = links
-network["meta"] = lens
-
-mapper.visualize(network, color_function = color, path_html="SC.html", title=dat,
-graph_link_distance=30, graph_gravity=0.1, graph_charge=-120, custom_tooltips=custom, width_html=0,
-height_html=0, show_tooltips=True, show_title=True, show_meta=True, res=param[0],gain=param[1], minimum=m,maximum=M)