summaryrefslogtreecommitdiff
path: root/src/Persistence_representations/example/persistence_weighted_gaussian.cpp
diff options
context:
space:
mode:
Diffstat (limited to 'src/Persistence_representations/example/persistence_weighted_gaussian.cpp')
-rw-r--r--src/Persistence_representations/example/persistence_weighted_gaussian.cpp99
1 files changed, 0 insertions, 99 deletions
diff --git a/src/Persistence_representations/example/persistence_weighted_gaussian.cpp b/src/Persistence_representations/example/persistence_weighted_gaussian.cpp
deleted file mode 100644
index 7945e4f1..00000000
--- a/src/Persistence_representations/example/persistence_weighted_gaussian.cpp
+++ /dev/null
@@ -1,99 +0,0 @@
-/* This file is part of the Gudhi Library. The Gudhi library
- * (Geometric Understanding in Higher Dimensions) is a generic C++
- * library for computational topology.
- *
- * Author(s): Mathieu Carriere
- *
- * Copyright (C) 2018 INRIA (France)
- *
- * This program is free software: you can redistribute it and/or modify
- * it under the terms of the GNU General Public License as published by
- * the Free Software Foundation, either version 3 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program. If not, see <http://www.gnu.org/licenses/>.
- */
-
-#include <gudhi/Persistence_weighted_gaussian.h>
-
-#include <iostream>
-#include <vector>
-#include <utility>
-
-using Persistence_diagram = Gudhi::Persistence_representations::Persistence_diagram;
-using PWG = Gudhi::Persistence_representations::Persistence_weighted_gaussian;
-
-int main(int argc, char** argv) {
-
- Persistence_diagram persistence1, persistence2;
-
- persistence1.push_back(std::make_pair(1, 2));
- persistence1.push_back(std::make_pair(6, 8));
- persistence1.push_back(std::make_pair(0, 4));
- persistence1.push_back(std::make_pair(3, 8));
-
- persistence2.push_back(std::make_pair(2, 9));
- persistence2.push_back(std::make_pair(1, 6));
- persistence2.push_back(std::make_pair(3, 5));
- persistence2.push_back(std::make_pair(6, 10));
-
- double sigma = 1;
- double tau = 1;
- int m = 10000;
-
- PWG PWG1(persistence1, sigma, m, Gudhi::Persistence_representations::arctan_weight(1,1));
- PWG PWG2(persistence2, sigma, m, Gudhi::Persistence_representations::arctan_weight(1,1));
-
- PWG PWGex1(persistence1, sigma, -1, Gudhi::Persistence_representations::arctan_weight(1,1));
- PWG PWGex2(persistence2, sigma, -1, Gudhi::Persistence_representations::arctan_weight(1,1));
-
-
- // Linear PWG
-
- std::cout << "Approx PWG kernel: " << PWG1.compute_scalar_product (PWG2) << std::endl;
- std::cout << "Exact PWG kernel: " << PWGex1.compute_scalar_product (PWGex2) << std::endl;
-
- std::cout << "Distance induced by approx PWG kernel: " << PWG1.distance (PWG2) << std::endl;
- std::cout << "Distance induced by exact PWG kernel: " << PWGex1.distance (PWGex2) << std::endl;
-
-
-
-
-
-
-
- // Gaussian PWG
-
- std::cout << "Approx Gaussian PWG kernel: " << std::exp( -PWG1.distance (PWG2) ) / (2*tau*tau) << std::endl;
- std::cout << "Exact Gaussian PWG kernel: " << std::exp( -PWGex1.distance (PWGex2) ) / (2*tau*tau) << std::endl;
-
-
-
-
-
-
-
- // PSS
-
- Persistence_diagram pd1 = persistence1; int numpts = persistence1.size(); for(int i = 0; i < numpts; i++) pd1.emplace_back(persistence1[i].second,persistence1[i].first);
- Persistence_diagram pd2 = persistence2; numpts = persistence2.size(); for(int i = 0; i < numpts; i++) pd2.emplace_back(persistence2[i].second,persistence2[i].first);
-
- PWG pwg1(pd1, 2*std::sqrt(sigma), m, Gudhi::Persistence_representations::pss_weight);
- PWG pwg2(pd2, 2*std::sqrt(sigma), m, Gudhi::Persistence_representations::pss_weight);
-
- PWG pwgex1(pd1, 2*std::sqrt(sigma), -1, Gudhi::Persistence_representations::pss_weight);
- PWG pwgex2(pd2, 2*std::sqrt(sigma), -1, Gudhi::Persistence_representations::pss_weight);
-
- std::cout << "Approx PSS kernel: " << pwg1.compute_scalar_product (pwg2) / (16*Gudhi::Persistence_representations::pi*sigma) << std::endl;
- std::cout << "Exact PSS kernel: " << pwgex1.compute_scalar_product (pwgex2) / (16*Gudhi::Persistence_representations::pi*sigma) << std::endl;
-
-
-
- return 0;
-}