summaryrefslogtreecommitdiff
path: root/src/Persistence_representations/example/persistence_weighted_gaussian.cpp
diff options
context:
space:
mode:
Diffstat (limited to 'src/Persistence_representations/example/persistence_weighted_gaussian.cpp')
-rw-r--r--src/Persistence_representations/example/persistence_weighted_gaussian.cpp96
1 files changed, 96 insertions, 0 deletions
diff --git a/src/Persistence_representations/example/persistence_weighted_gaussian.cpp b/src/Persistence_representations/example/persistence_weighted_gaussian.cpp
new file mode 100644
index 00000000..e95b9445
--- /dev/null
+++ b/src/Persistence_representations/example/persistence_weighted_gaussian.cpp
@@ -0,0 +1,96 @@
+/* This file is part of the Gudhi Library. The Gudhi library
+ * (Geometric Understanding in Higher Dimensions) is a generic C++
+ * library for computational topology.
+ *
+ * Author(s): Mathieu Carriere
+ *
+ * Copyright (C) 2018 INRIA (France)
+ *
+ * This program is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ */
+
+#include <gudhi/Persistence_weighted_gaussian.h>
+
+#include <iostream>
+#include <vector>
+#include <utility>
+
+using PD = std::vector<std::pair<double,double> >;
+using PWG = Gudhi::Persistence_representations::Persistence_weighted_gaussian;
+
+int main(int argc, char** argv) {
+
+ std::vector<std::pair<double, double> > persistence1;
+ std::vector<std::pair<double, double> > persistence2;
+
+ persistence1.push_back(std::make_pair(1, 2));
+ persistence1.push_back(std::make_pair(6, 8));
+ persistence1.push_back(std::make_pair(0, 4));
+ persistence1.push_back(std::make_pair(3, 8));
+
+ persistence2.push_back(std::make_pair(2, 9));
+ persistence2.push_back(std::make_pair(1, 6));
+ persistence2.push_back(std::make_pair(3, 5));
+ persistence2.push_back(std::make_pair(6, 10));
+
+ PWG PWG1(persistence1);
+ PWG PWG2(persistence2);
+ double sigma = 1;
+ double tau = 1;
+ int m = 1000;
+
+
+
+ // Linear PWG
+
+ std::cout << PWG1.compute_scalar_product (PWG2, sigma, PWG::arctan_weight, m) << std::endl;
+ std::cout << PWG1.compute_scalar_product (PWG2, sigma, PWG::arctan_weight, -1) << std::endl;
+
+ std::cout << PWG1.distance (PWG2, sigma, PWG::arctan_weight, m) << std::endl;
+ std::cout << PWG1.distance (PWG2, sigma, PWG::arctan_weight, -1) << std::endl;
+
+
+
+
+
+
+
+ // Gaussian PWG
+
+ std::cout << std::exp( -PWG1.distance (PWG2, sigma, PWG::arctan_weight, m, 2) ) / (2*tau*tau) << std::endl;
+ std::cout << std::exp( -PWG1.distance (PWG2, sigma, PWG::arctan_weight, -1, 2) ) / (2*tau*tau) << std::endl;
+
+
+
+
+
+
+
+ // PSS
+
+ PD pd1 = persistence1; int numpts = persistence1.size(); for(int i = 0; i < numpts; i++) pd1.emplace_back(persistence1[i].second,persistence1[i].first);
+ PD pd2 = persistence2; numpts = persistence2.size(); for(int i = 0; i < numpts; i++) pd2.emplace_back(persistence2[i].second,persistence2[i].first);
+
+ PWG pwg1(pd1);
+ PWG pwg2(pd2);
+
+ std::cout << pwg1.compute_scalar_product (pwg2, 2*std::sqrt(sigma), PWG::pss_weight, m) / (16*pi*sigma) << std::endl;
+ std::cout << pwg1.compute_scalar_product (pwg2, 2*std::sqrt(sigma), PWG::pss_weight, -1) / (16*pi*sigma) << std::endl;
+
+ std::cout << pwg1.distance (pwg2, 2*std::sqrt(sigma), PWG::pss_weight, m) / (16*pi*sigma) << std::endl;
+ std::cout << pwg1.distance (pwg2, 2*std::sqrt(sigma), PWG::pss_weight, -1) / (16*pi*sigma) << std::endl;
+
+
+ return 0;
+}