diff options
Diffstat (limited to 'src/Persistence_representations/utilities/persistence_heat_maps')
10 files changed, 45 insertions, 34 deletions
diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/CMakeLists.txt b/src/Persistence_representations/utilities/persistence_heat_maps/CMakeLists.txt index 89ef232f..e4c471c2 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/CMakeLists.txt +++ b/src/Persistence_representations/utilities/persistence_heat_maps/CMakeLists.txt @@ -2,13 +2,24 @@ project(Persistence_representations_heat_maps_utilities) add_persistence_representation_creation_utility(create_pssk "10" "-1" "-1" "4" "-1") add_persistence_representation_creation_utility(create_p_h_m_weighted_by_arctan_of_their_persistence "10" "-1" "-1" "4" "-1") + add_persistence_representation_creation_utility(create_p_h_m_weighted_by_distance_from_diagonal "10" "-1" "-1" "4" "-1") +# Tests output the same file +set_tests_properties(Persistence_representation_utilities_create_p_h_m_weighted_by_distance_from_diagonal PROPERTIES DEPENDS + Persistence_representation_utilities_create_p_h_m_weighted_by_arctan_of_their_persistence) + add_persistence_representation_creation_utility(create_p_h_m_weighted_by_squared_diag_distance "10" "-1" "-1" "4" "-1") +# Tests output the same file +set_tests_properties(Persistence_representation_utilities_create_p_h_m_weighted_by_squared_diag_distance PROPERTIES DEPENDS + Persistence_representation_utilities_create_p_h_m_weighted_by_distance_from_diagonal) + # Need to set grid min and max for further average, distance and scalar_product add_persistence_representation_creation_utility(create_persistence_heat_maps "10" "0" "35" "10" "-1") +set_tests_properties(Persistence_representation_utilities_create_persistence_heat_maps PROPERTIES DEPENDS + Persistence_representation_utilities_create_p_h_m_weighted_by_squared_diag_distance) -add_persistence_representation_plot_utility(plot_persistence_heat_map ".mps") +add_persistence_representation_plot_utility(create_persistence_heat_maps plot_persistence_heat_map ".mps") -add_persistence_representation_function_utility(average_persistence_heat_maps ".mps") -add_persistence_representation_function_utility(compute_distance_of_persistence_heat_maps ".mps" "1") -add_persistence_representation_function_utility(compute_scalar_product_of_persistence_heat_maps ".mps") +add_persistence_representation_function_utility(create_persistence_heat_maps average_persistence_heat_maps ".mps") +add_persistence_representation_function_utility(create_persistence_heat_maps compute_distance_of_persistence_heat_maps ".mps" "1") +add_persistence_representation_function_utility(create_persistence_heat_maps compute_scalar_product_of_persistence_heat_maps ".mps") diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/average_persistence_heat_maps.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/average_persistence_heat_maps.cpp index 3d088b58..54b1f77d 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/average_persistence_heat_maps.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/average_persistence_heat_maps.cpp @@ -17,12 +17,12 @@ using constant_scaling_function = Gudhi::Persistence_representations::constant_s using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<constant_scaling_function>; int main(int argc, char** argv) { - std::cout << "This program computes average of persistence heat maps stored in files (the files needs to be " + std::clog << "This program computes average of persistence heat maps stored in files (the files needs to be " << "created beforehand).\n" << "The parameters of this programs are names of files with persistence heat maps.\n"; if (argc < 3) { - std::cout << "Wrong number of parameters, the program will now terminate \n"; + std::clog << "Wrong number of parameters, the program will now terminate \n"; return 1; } @@ -46,6 +46,6 @@ int main(int argc, char** argv) { delete maps[i]; } - std::cout << "Average can be found in 'average.mps' file\n"; + std::clog << "Average can be found in 'average.mps' file\n"; return 0; } diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp index 48000bb1..757a97fc 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/compute_distance_of_persistence_heat_maps.cpp @@ -19,14 +19,14 @@ using constant_scaling_function = Gudhi::Persistence_representations::constant_s using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<constant_scaling_function>; int main(int argc, char** argv) { - std::cout << "This program computes distance of persistence heat maps stored in files (the files needs to be " + std::clog << "This program computes distance of persistence heat maps stored in files (the files needs to be " << "created beforehand).\n" << "The first parameter of a program is an integer p. The program compute L^p distance of the two heat " << "maps. For L^infty distance choose p = -1. \n" << "The remaining parameters of this program are names of files with persistence heat maps.\n"; if (argc < 3) { - std::cout << "Wrong number of parameters, the program will now terminate \n"; + std::clog << "Wrong number of parameters, the program will now terminate \n"; return 1; } @@ -69,14 +69,14 @@ int main(int argc, char** argv) { out.open("distance.mps"); for (size_t i = 0; i != distance.size(); ++i) { for (size_t j = 0; j != distance.size(); ++j) { - std::cout << distance[i][j] << " "; + std::clog << distance[i][j] << " "; out << distance[i][j] << " "; } - std::cout << std::endl; + std::clog << std::endl; out << std::endl; } out.close(); - std::cout << "Distance can be found in 'distance.mps' file\n"; + std::clog << "Distance can be found in 'distance.mps' file\n"; return 0; } diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/compute_scalar_product_of_persistence_heat_maps.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/compute_scalar_product_of_persistence_heat_maps.cpp index 8a96f1b0..e7f18ce1 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/compute_scalar_product_of_persistence_heat_maps.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/compute_scalar_product_of_persistence_heat_maps.cpp @@ -18,12 +18,12 @@ using constant_scaling_function = Gudhi::Persistence_representations::constant_s using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<constant_scaling_function>; int main(int argc, char** argv) { - std::cout << "This program computes scalar product of persistence heat maps stored in a file (the file needs to be " + std::clog << "This program computes scalar product of persistence heat maps stored in a file (the file needs to be " << "created beforehand). \n" << "The parameters of this programs are names of files with persistence heat maps.\n"; if (argc < 3) { - std::cout << "Wrong number of parameters, the program will now terminate \n"; + std::clog << "Wrong number of parameters, the program will now terminate \n"; return 1; } @@ -60,14 +60,14 @@ int main(int argc, char** argv) { out.open("scalar_product.mps"); for (size_t i = 0; i != scalar_product.size(); ++i) { for (size_t j = 0; j != scalar_product.size(); ++j) { - std::cout << scalar_product[i][j] << " "; + std::clog << scalar_product[i][j] << " "; out << scalar_product[i][j] << " "; } - std::cout << std::endl; + std::clog << std::endl; out << std::endl; } out.close(); - std::cout << "Distance can be found in 'scalar_product.mps' file\n"; + std::clog << "Distance can be found in 'scalar_product.mps' file\n"; return 0; } diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp index f82a39b0..6b38b930 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_arctan_of_their_persistence.cpp @@ -20,7 +20,7 @@ using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<arc_tan_of_persistence_of_point>; int main(int argc, char** argv) { - std::cout << "This program creates persistence heat map files (*.mps) of persistence diagrams files (*.pers) " + std::clog << "This program creates persistence heat map files (*.mps) of persistence diagrams files (*.pers) " << "provided as an input.The Gaussian kernels are weighted by the arc tangential of their persistence.\n" << "The first parameter of a program is an integer, a size of a grid.\n" << "The second and third parameters are min and max of the grid. If you want those numbers to be computed " @@ -36,7 +36,7 @@ int main(int argc, char** argv) { << "The remaining parameters are the names of files with persistence diagrams. \n"; if (argc < 7) { - std::cout << "Wrong parameter list, the program will now terminate \n"; + std::clog << "Wrong parameter list, the program will now terminate \n"; return 1; } @@ -58,7 +58,7 @@ int main(int argc, char** argv) { std::vector<std::vector<double> > filter = Gudhi::Persistence_representations::create_Gaussian_filter(stdiv, 1); for (size_t i = 0; i != filenames.size(); ++i) { - std::cout << "Creating a heat map based on a file : " << filenames[i] << std::endl; + std::clog << "Creating a heat map based on a file : " << filenames[i] << std::endl; Persistence_heat_maps l(filenames[i], filter, false, size_of_grid, min_, max_, dimension); std::stringstream ss; diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp index 5a657b13..fece2e36 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_distance_from_diagonal.cpp @@ -19,7 +19,7 @@ using distance_from_diagonal_scaling = Gudhi::Persistence_representations::dista using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<distance_from_diagonal_scaling>; int main(int argc, char** argv) { - std::cout << "This program creates persistence heat map files (*.mps) of persistence diagrams files (*.pers) " + std::clog << "This program creates persistence heat map files (*.mps) of persistence diagrams files (*.pers) " << "provided as an input.The Gaussian kernels are weighted by the distance of a center from the " << "diagonal.\n" << "The first parameter of a program is an integer, a size of a grid.\n" @@ -36,7 +36,7 @@ int main(int argc, char** argv) { << "The remaining parameters are the names of files with persistence diagrams. \n"; if (argc < 7) { - std::cout << "Wrong parameter list, the program will now terminate \n"; + std::clog << "Wrong parameter list, the program will now terminate \n"; return 1; } @@ -58,7 +58,7 @@ int main(int argc, char** argv) { std::vector<std::vector<double> > filter = Gudhi::Persistence_representations::create_Gaussian_filter(stdiv, 1); for (size_t i = 0; i != filenames.size(); ++i) { - std::cout << "Creating a heat map based on a file : " << filenames[i] << std::endl; + std::clog << "Creating a heat map based on a file : " << filenames[i] << std::endl; Persistence_heat_maps l(filenames[i], filter, false, size_of_grid, min_, max_, dimension); std::stringstream ss; diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp index 8d67a54d..86e6fc19 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_p_h_m_weighted_by_squared_diag_distance.cpp @@ -21,7 +21,7 @@ using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<squared_distance_from_diagonal_scaling>; int main(int argc, char** argv) { - std::cout << "This program creates persistence heat map files (*.mps) of persistence diagrams files (*.pers) " + std::clog << "This program creates persistence heat map files (*.mps) of persistence diagrams files (*.pers) " << "provided as an input.The Gaussian kernels are weighted by the square of distance of a center from the " << "diagonal.\n" << "The first parameter of a program is an integer, a size of a grid.\n" @@ -38,7 +38,7 @@ int main(int argc, char** argv) { << "The remaining parameters are the names of files with persistence diagrams. \n"; if (argc < 7) { - std::cout << "Wrong parameter list, the program will now terminate \n"; + std::clog << "Wrong parameter list, the program will now terminate \n"; return 1; } @@ -60,7 +60,7 @@ int main(int argc, char** argv) { std::vector<std::vector<double> > filter = Gudhi::Persistence_representations::create_Gaussian_filter(stdiv, 1); for (size_t i = 0; i != filenames.size(); ++i) { - std::cout << "Creating a heat map based on a file : " << filenames[i] << std::endl; + std::clog << "Creating a heat map based on a file : " << filenames[i] << std::endl; Persistence_heat_maps l(filenames[i], filter, false, size_of_grid, min_, max_, dimension); std::stringstream ss; diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp index 29170c32..ca27f8e3 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_persistence_heat_maps.cpp @@ -19,7 +19,7 @@ using constant_scaling_function = Gudhi::Persistence_representations::constant_s using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<constant_scaling_function>; int main(int argc, char** argv) { - std::cout << "This program creates persistence heat map files (*.mps) of persistence diagrams files (*.pers) " + std::clog << "This program creates persistence heat map files (*.mps) of persistence diagrams files (*.pers) " << "provided as an input.\n" << "The first parameter of a program is an integer, a size of a grid.\n" << "The second and third parameters are min and max of the grid. If you want those numbers to be computed " @@ -35,7 +35,7 @@ int main(int argc, char** argv) { << "The remaining parameters are the names of files with persistence diagrams. \n"; if (argc < 7) { - std::cout << "Wrong parameter list, the program will now terminate \n"; + std::clog << "Wrong parameter list, the program will now terminate \n"; return 1; } size_t size_of_grid = (size_t)atoi(argv[1]); @@ -55,7 +55,7 @@ int main(int argc, char** argv) { std::vector<std::vector<double> > filter = Gudhi::Persistence_representations::create_Gaussian_filter(stdiv, 1); for (size_t i = 0; i != filenames.size(); ++i) { - std::cout << "Creating a heat map based on file : " << filenames[i] << std::endl; + std::clog << "Creating a heat map based on file : " << filenames[i] << std::endl; Persistence_heat_maps l(filenames[i], filter, false, size_of_grid, min_, max_, dimension); std::stringstream ss; diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp index 995771b9..d2ebcc7e 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/create_pssk.cpp @@ -18,7 +18,7 @@ using PSSK = Gudhi::Persistence_representations::PSSK; int main(int argc, char** argv) { - std::cout << "This program creates PSSK files (*.pssk) of persistence diagrams files (*.pers) " + std::clog << "This program creates PSSK files (*.pssk) of persistence diagrams files (*.pers) " << "provided as an input.\n" << "The first parameter of a program is an integer, a size of a grid.\n" << "The second and third parameters are min and max of the grid. If you want those numbers to be computed " @@ -34,7 +34,7 @@ int main(int argc, char** argv) { << "The remaining parameters are the names of files with persistence diagrams. \n"; if (argc < 7) { - std::cout << "Wrong parameter list, the program will now terminate \n"; + std::clog << "Wrong parameter list, the program will now terminate \n"; return 1; } @@ -56,7 +56,7 @@ int main(int argc, char** argv) { std::vector<std::vector<double> > filter = Gudhi::Persistence_representations::create_Gaussian_filter(stdiv, 1); for (size_t i = 0; i != filenames.size(); ++i) { - std::cout << "Creating a PSSK based on a file : " << filenames[i] << std::endl; + std::clog << "Creating a PSSK based on a file : " << filenames[i] << std::endl; PSSK l(filenames[i], filter, size_of_grid, min_, max_, dimension); std::stringstream ss; diff --git a/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp b/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp index cf6e07cb..87cc97d1 100644 --- a/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp +++ b/src/Persistence_representations/utilities/persistence_heat_maps/plot_persistence_heat_map.cpp @@ -17,10 +17,10 @@ using constant_scaling_function = Gudhi::Persistence_representations::constant_s using Persistence_heat_maps = Gudhi::Persistence_representations::Persistence_heat_maps<constant_scaling_function>; int main(int argc, char** argv) { - std::cout << "This program creates a gnuplot script from a persistence heat maps stored in a file (the file needs " + std::clog << "This program creates a gnuplot script from a persistence heat maps stored in a file (the file needs " << "to be created beforehand). Please call the code with the name of a single heat maps file \n"; if (argc != 2) { - std::cout << "Wrong parameter list, the program will now terminate \n"; + std::clog << "Wrong parameter list, the program will now terminate \n"; return 1; } Persistence_heat_maps l; |