diff options
Diffstat (limited to 'src/Persistent_cohomology/test')
| -rw-r--r-- | src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp | 176 | ||||
| -rw-r--r-- | src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp | 84 |
2 files changed, 132 insertions, 128 deletions
diff --git a/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp b/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp index fe3f8517..ea41a8aa 100644 --- a/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp +++ b/src/Persistent_cohomology/test/persistent_cohomology_unit_test.cpp @@ -21,7 +21,7 @@ using namespace boost::unit_test; typedef Simplex_tree<> typeST; -std::string test_rips_persistence(int coefficient, int min_persistence) { +std::string test_persistence(int coefficient, int min_persistence) { // file is copied in CMakeLists.txt std::ifstream simplex_tree_stream; simplex_tree_stream.open("simplex_tree_file_for_unit_test.txt"); @@ -44,16 +44,16 @@ std::string test_rips_persistence(int coefficient, int min_persistence) { Persistent_cohomology<Simplex_tree<>, Field_Zp> pcoh(st); pcoh.init_coefficients( coefficient ); // initializes the coefficient field for homology - // Check infinite rips + // Compute the persistent homology of the complex pcoh.compute_persistent_cohomology( min_persistence ); // Minimal lifetime of homology feature to be recorded. - std::ostringstream ossInfinite; + std::ostringstream ossPers; - pcoh.output_diagram(ossInfinite); - std::string strInfinite = ossInfinite.str(); - return strInfinite; + pcoh.output_diagram(ossPers); + std::string strPers = ossPers.str(); + return strPers; } -void test_rips_persistence_in_dimension(int dimension) { +void test_persistence_with_coeff_field(int coeff_field) { std::string value0(" 0 0.02 1.12"); std::string value1(" 0 0.03 1.13"); std::string value2(" 0 0.04 1.14"); @@ -65,112 +65,104 @@ void test_rips_persistence_in_dimension(int dimension) { std::string value8(" 0 0 inf" ); std::string value9(" 0 0.01 inf" ); - value0.insert(0,std::to_string(dimension)); - value1.insert(0,std::to_string(dimension)); - value2.insert(0,std::to_string(dimension)); - value3.insert(0,std::to_string(dimension)); - value4.insert(0,std::to_string(dimension)); - value5.insert(0,std::to_string(dimension)); - value6.insert(0,std::to_string(dimension)); - value7.insert(0,std::to_string(dimension)); - value8.insert(0,std::to_string(dimension)); - value9.insert(0,std::to_string(dimension)); + value0.insert(0,std::to_string(coeff_field)); + value1.insert(0,std::to_string(coeff_field)); + value2.insert(0,std::to_string(coeff_field)); + value3.insert(0,std::to_string(coeff_field)); + value4.insert(0,std::to_string(coeff_field)); + value5.insert(0,std::to_string(coeff_field)); + value6.insert(0,std::to_string(coeff_field)); + value7.insert(0,std::to_string(coeff_field)); + value8.insert(0,std::to_string(coeff_field)); + value9.insert(0,std::to_string(coeff_field)); std::clog << "********************************************************************" << std::endl; - std::clog << "TEST OF RIPS_PERSISTENT_COHOMOLOGY_SINGLE_FIELD DIM=" << dimension << " MIN_PERS=0" << std::endl; + std::clog << "TEST OF PERSISTENT_COHOMOLOGY_SINGLE_FIELD COEFF_FIELD=" << coeff_field << " MIN_PERS=0" << std::endl; - std::string str_rips_persistence = test_rips_persistence(dimension, 0); - std::clog << str_rips_persistence << std::endl; + std::string str_persistence = test_persistence(coeff_field, 0); + std::clog << str_persistence << std::endl; - BOOST_CHECK(str_rips_persistence.find(value0) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value1) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value2) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value3) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value4) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value5) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value6) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value7) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value8) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value9) != std::string::npos); // Check found - std::clog << "str_rips_persistence=" << str_rips_persistence << std::endl; + BOOST_CHECK(str_persistence.find(value0) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value1) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value2) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value3) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value4) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value5) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value6) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value7) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value8) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value9) != std::string::npos); // Check found + std::clog << "str_persistence=" << str_persistence << std::endl; std::clog << "********************************************************************" << std::endl; - std::clog << "TEST OF RIPS_PERSISTENT_COHOMOLOGY_SINGLE_FIELD DIM=" << dimension << " MIN_PERS=1" << std::endl; - - str_rips_persistence = test_rips_persistence(dimension, 1); - - BOOST_CHECK(str_rips_persistence.find(value0) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value1) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value2) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value3) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value4) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value5) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value6) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value7) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value8) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value9) != std::string::npos); // Check found - std::clog << "str_rips_persistence=" << str_rips_persistence << std::endl; + std::clog << "TEST OF PERSISTENT_COHOMOLOGY_SINGLE_FIELD COEFF_FIELD=" << coeff_field << " MIN_PERS=1" << std::endl; + + str_persistence = test_persistence(coeff_field, 1); + + BOOST_CHECK(str_persistence.find(value0) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value1) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value2) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value3) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value4) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value5) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value6) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value7) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value8) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value9) != std::string::npos); // Check found + std::clog << "str_persistence=" << str_persistence << std::endl; std::clog << "********************************************************************" << std::endl; - std::clog << "TEST OF RIPS_PERSISTENT_COHOMOLOGY_SINGLE_FIELD DIM=" << dimension << " MIN_PERS=2" << std::endl; - - str_rips_persistence = test_rips_persistence(dimension, 2); - - BOOST_CHECK(str_rips_persistence.find(value0) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value1) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value2) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value3) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value4) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value5) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value6) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value7) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value8) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value9) != std::string::npos); // Check found - std::clog << "str_rips_persistence=" << str_rips_persistence << std::endl; + std::clog << "TEST OF PERSISTENT_COHOMOLOGY_SINGLE_FIELD COEFF_FIELD=" << coeff_field << " MIN_PERS=2" << std::endl; + + str_persistence = test_persistence(coeff_field, 2); + + BOOST_CHECK(str_persistence.find(value0) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value1) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value2) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value3) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value4) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value5) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value6) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value7) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value8) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value9) != std::string::npos); // Check found + std::clog << "str_persistence=" << str_persistence << std::endl; std::clog << "********************************************************************" << std::endl; - std::clog << "TEST OF RIPS_PERSISTENT_COHOMOLOGY_SINGLE_FIELD DIM=" << dimension << " MIN_PERS=Inf" << std::endl; - - str_rips_persistence = test_rips_persistence(dimension, (std::numeric_limits<int>::max)()); - - BOOST_CHECK(str_rips_persistence.find(value0) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value1) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value2) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value3) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value4) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value5) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value6) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value7) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value8) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value9) != std::string::npos); // Check found - std::clog << "str_rips_persistence=" << str_rips_persistence << std::endl; + std::clog << "TEST OF PERSISTENT_COHOMOLOGY_SINGLE_FIELD COEFF_FIELD=" << coeff_field << " MIN_PERS=Inf" << std::endl; + + str_persistence = test_persistence(coeff_field, (std::numeric_limits<int>::max)()); + + BOOST_CHECK(str_persistence.find(value0) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value1) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value2) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value3) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value4) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value5) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value6) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value7) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value8) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value9) != std::string::npos); // Check found + std::clog << "str_persistence=" << str_persistence << std::endl; } -BOOST_AUTO_TEST_CASE( rips_persistent_cohomology_single_field_dim_1 ) +BOOST_AUTO_TEST_CASE( persistent_cohomology_single_field_coeff_not_prime ) { - test_rips_persistence_in_dimension(1); + for (auto non_prime : {0, 1, 4, 6}) + BOOST_CHECK_THROW(test_persistence_with_coeff_field(non_prime), std::invalid_argument); } -BOOST_AUTO_TEST_CASE( rips_persistent_cohomology_single_field_dim_2 ) +BOOST_AUTO_TEST_CASE( persistent_cohomology_single_field_coeff_prime ) { - test_rips_persistence_in_dimension(2); + for (auto prime : {2, 3, 5, 11, 13}) + test_persistence_with_coeff_field(prime); } -BOOST_AUTO_TEST_CASE( rips_persistent_cohomology_single_field_dim_3 ) +BOOST_AUTO_TEST_CASE( persistent_cohomology_single_field_coeff_limit ) { - test_rips_persistence_in_dimension(3); + BOOST_CHECK_THROW(test_persistence_with_coeff_field(46349), std::invalid_argument); } -BOOST_AUTO_TEST_CASE( rips_persistent_cohomology_single_field_dim_5 ) -{ - test_rips_persistence_in_dimension(5); -} - -// TODO(VR): not working from 6 -// std::string str_rips_persistence = test_rips_persistence(6, 0); -// TODO(VR): division by zero -// std::string str_rips_persistence = test_rips_persistence(0, 0); - /** SimplexTree minimal options to test the limits. * * Maximum number of simplices to compute persistence is <CODE>std::numeric_limits<std::uint8_t>::max()<\CODE> = 256.*/ diff --git a/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp b/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp index 3602aa09..c6c0bfaf 100644 --- a/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp +++ b/src/Persistent_cohomology/test/persistent_cohomology_unit_test_multi_field.cpp @@ -21,7 +21,7 @@ using namespace boost::unit_test; typedef Simplex_tree<> typeST; -std::string test_rips_persistence(int min_coefficient, int max_coefficient, double min_persistence) { +std::string test_persistence(int min_coefficient, int max_coefficient, double min_persistence) { // file is copied in CMakeLists.txt std::ifstream simplex_tree_stream; simplex_tree_stream.open("simplex_tree_file_for_multi_field_unit_test.txt"); @@ -44,17 +44,17 @@ std::string test_rips_persistence(int min_coefficient, int max_coefficient, doub Persistent_cohomology<Simplex_tree<>, Multi_field> pcoh(st); pcoh.init_coefficients(min_coefficient, max_coefficient); // initializes the coefficient field for homology - // Check infinite rips + // Compute the persistent homology of the complex pcoh.compute_persistent_cohomology(min_persistence); // Minimal lifetime of homology feature to be recorded. - std::ostringstream ossRips; - pcoh.output_diagram(ossRips); + std::ostringstream ossPers; + pcoh.output_diagram(ossPers); - std::string strRips = ossRips.str(); - return strRips; + std::string strPers = ossPers.str(); + return strPers; } -void test_rips_persistence_in_dimension(int min_dimension, int max_dimension) { +void test_persistence_with_coeff_field(int min_coefficient, int max_coefficient) { // there are 2 discontinued ensembles std::string value0(" 0 0.25 inf"); std::string value1(" 1 0.4 inf"); @@ -69,47 +69,59 @@ void test_rips_persistence_in_dimension(int min_dimension, int max_dimension) { std::string value7(" 2 0.4 inf"); std::clog << "********************************************************************" << std::endl; - std::clog << "TEST OF RIPS_PERSISTENT_COHOMOLOGY_MULTI_FIELD MIN_DIM=" << min_dimension << " MAX_DIM=" << max_dimension << " MIN_PERS=0" << std::endl; + std::clog << "TEST OF PERSISTENT_COHOMOLOGY_MULTI_FIELD MIN_COEFF=" << min_coefficient << " MAX_COEFF=" << max_coefficient << " MIN_PERS=0" << std::endl; - std::string str_rips_persistence = test_rips_persistence(min_dimension, max_dimension, 0.0); - std::clog << "str_rips_persistence=" << str_rips_persistence << std::endl; + std::string str_persistence = test_persistence(min_coefficient, max_coefficient, 0.0); + std::clog << "str_persistence=" << str_persistence << std::endl; - BOOST_CHECK(str_rips_persistence.find(value0) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value1) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value2) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value0) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value1) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value2) != std::string::npos); // Check found - if ((min_dimension < 2) && (max_dimension < 2)) { - BOOST_CHECK(str_rips_persistence.find(value3) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value4) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value5) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value6) != std::string::npos); // Check found - BOOST_CHECK(str_rips_persistence.find(value7) != std::string::npos); // Check found + if ((min_coefficient < 2) && (max_coefficient < 2)) { + BOOST_CHECK(str_persistence.find(value3) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value4) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value5) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value6) != std::string::npos); // Check found + BOOST_CHECK(str_persistence.find(value7) != std::string::npos); // Check found } else { - BOOST_CHECK(str_rips_persistence.find(value3) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value4) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value5) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value6) == std::string::npos); // Check not found - BOOST_CHECK(str_rips_persistence.find(value7) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value3) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value4) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value5) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value6) == std::string::npos); // Check not found + BOOST_CHECK(str_persistence.find(value7) == std::string::npos); // Check not found } } -BOOST_AUTO_TEST_CASE(rips_persistent_cohomology_multi_field_dim_1_2) { - test_rips_persistence_in_dimension(0, 1); +BOOST_AUTO_TEST_CASE(persistent_cohomology_multi_field_coeff_0_0) { + test_persistence_with_coeff_field(0, 0); } -BOOST_AUTO_TEST_CASE(rips_persistent_cohomology_multi_field_dim_2_3) { - test_rips_persistence_in_dimension(1, 3); +BOOST_AUTO_TEST_CASE(persistent_cohomology_multi_field_coeff_0_1) { + test_persistence_with_coeff_field(0, 1); } -BOOST_AUTO_TEST_CASE(rips_persistent_cohomology_multi_field_dim_1_5) { - test_rips_persistence_in_dimension(1, 5); +BOOST_AUTO_TEST_CASE(persistent_cohomology_multi_field_coeff_0_6) { + test_persistence_with_coeff_field(0, 6); } -// TODO(VR): not working from 6 -// std::string str_rips_persistence = test_rips_persistence(6, 0); -// TODO(VR): division by zero -// std::string str_rips_persistence = test_rips_persistence(0, 0); -// TODO(VR): is result OK of : -// test_rips_persistence_in_dimension(3, 4); +BOOST_AUTO_TEST_CASE(persistent_cohomology_multi_field_coeff_1_2) { + test_persistence_with_coeff_field(1, 2); +} + +BOOST_AUTO_TEST_CASE(persistent_cohomology_multi_field_coeff_1_3) { + test_persistence_with_coeff_field(1, 3); +} + +BOOST_AUTO_TEST_CASE(persistent_cohomology_multi_field_coeff_1_5) { + test_persistence_with_coeff_field(1, 5); +} + +BOOST_AUTO_TEST_CASE(persistent_cohomology_multi_field_coeff_2_3) { + test_persistence_with_coeff_field(2, 3); +} +BOOST_AUTO_TEST_CASE(persistent_cohomology_multi_field_coeff_3_4) { + test_persistence_with_coeff_field(3, 4); +} |