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-rw-r--r--src/Witness_complex/example/example_witness_complex_sphere.cpp70
1 files changed, 70 insertions, 0 deletions
diff --git a/src/Witness_complex/example/example_witness_complex_sphere.cpp b/src/Witness_complex/example/example_witness_complex_sphere.cpp
new file mode 100644
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+++ b/src/Witness_complex/example/example_witness_complex_sphere.cpp
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+#define BOOST_PARAMETER_MAX_ARITY 12
+
+#include <gudhi/Simplex_tree.h>
+#include <gudhi/Euclidean_witness_complex.h>
+#include <gudhi/pick_n_random_points.h>
+#include <gudhi/choose_n_farthest_points.h>
+#include <gudhi/reader_utils.h>
+
+#include <CGAL/Epick_d.h>
+
+#include <iostream>
+#include <fstream>
+#include <ctime>
+#include <utility>
+#include <string>
+#include <vector>
+
+#include "generators.h"
+
+/** Write a gnuplot readable file.
+ * Data range is a random access range of pairs (arg, value)
+ */
+template <typename Data_range>
+void write_data(Data_range& data, std::string filename) {
+ std::ofstream ofs(filename, std::ofstream::out);
+ for (auto entry : data) ofs << entry.first << ", " << entry.second << "\n";
+ ofs.close();
+}
+
+int main(int argc, char* const argv[]) {
+ using Kernel = CGAL::Epick_d<CGAL::Dynamic_dimension_tag>;
+ using Witness_complex = Gudhi::witness_complex::Euclidean_witness_complex<Kernel>;
+
+ if (argc != 2) {
+ std::cerr << "Usage: " << argv[0] << " number_of_landmarks \n";
+ return 0;
+ }
+
+ int number_of_landmarks = atoi(argv[1]);
+
+ std::vector<std::pair<int, double> > l_time;
+
+ // Generate points
+ for (int nbP = 500; nbP < 10000; nbP += 500) {
+ clock_t start, end;
+ // Construct the Simplex Tree
+ Gudhi::Simplex_tree<> simplex_tree;
+ Point_Vector point_vector, landmarks;
+ generate_points_sphere(point_vector, nbP, 4);
+ std::cout << "Successfully generated " << point_vector.size() << " points.\n";
+ std::cout << "Ambient dimension is " << point_vector[0].size() << ".\n";
+
+ // Choose landmarks
+ start = clock();
+ // Gudhi::subsampling::pick_n_random_points(point_vector, number_of_landmarks, std::back_inserter(landmarks));
+ Gudhi::subsampling::choose_n_farthest_points(K(), point_vector, number_of_landmarks,
+ Gudhi::subsampling::random_starting_point,
+ std::back_inserter(landmarks));
+
+ // Compute witness complex
+ Witness_complex witness_complex(landmarks, point_vector);
+ witness_complex.create_complex(simplex_tree, 0);
+ end = clock();
+ double time = static_cast<double>(end - start) / CLOCKS_PER_SEC;
+ std::cout << "Witness complex for " << number_of_landmarks << " landmarks took " << time << " s. \n";
+ std::cout << "Number of simplices is: " << simplex_tree.num_simplices() << "\n";
+ l_time.push_back(std::make_pair(nbP, time));
+ }
+ write_data(l_time, "w_time.dat");
+}