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-rw-r--r--src/Witness_complex/example/witness_complex_from_file.cpp47
1 files changed, 15 insertions, 32 deletions
diff --git a/src/Witness_complex/example/witness_complex_from_file.cpp b/src/Witness_complex/example/witness_complex_from_file.cpp
index 53207ad2..bb641b3c 100644
--- a/src/Witness_complex/example/witness_complex_from_file.cpp
+++ b/src/Witness_complex/example/witness_complex_from_file.cpp
@@ -23,9 +23,11 @@
#include <sys/types.h>
#include <sys/stat.h>
+#include <gudhi/Points_off_io.h>
#include <gudhi/Simplex_tree.h>
#include <gudhi/Witness_complex.h>
-#include <gudhi/Landmark_choice_by_random_point.h>
+#include <gudhi/Construct_closest_landmark_table.h>
+#include <gudhi/pick_n_random_points.h>
#include <gudhi/reader_utils.h>
#include <iostream>
@@ -37,56 +39,37 @@
typedef std::vector< Vertex_handle > typeVectorVertex;
typedef std::vector< std::vector <double> > Point_Vector;
-/**
- * \brief Customized version of read_points
- * which takes into account a possible nbP first line
- *
- */
-inline void
-read_points_cust(std::string file_name, std::vector< std::vector< double > > & points) {
- std::ifstream in_file(file_name.c_str(), std::ios::in);
- if (!in_file.is_open()) {
- std::cerr << "Unable to open file " << file_name << std::endl;
- return;
- }
- std::string line;
- double x;
- while (getline(in_file, line)) {
- std::vector< double > point;
- std::istringstream iss(line);
- while (iss >> x) {
- point.push_back(x);
- }
- if (point.size() != 1)
- points.push_back(point);
- }
- in_file.close();
-}
-
int main(int argc, char * const argv[]) {
if (argc != 3) {
std::cerr << "Usage: " << argv[0]
- << " path_to_point_file nbL \n";
+ << " path_to_point_file.off nbL \n";
return 0;
}
- std::string file_name = argv[1];
+ std::string off_file_name = argv[1];
int nbL = atoi(argv[2]);
clock_t start, end;
// Construct the Simplex Tree
Gudhi::Simplex_tree<> simplex_tree;
+ // Read the OFF file (input file name given as parameter) and triangulate points
+ Gudhi::Points_off_reader<std::vector <double>> off_reader(off_file_name);
+ // Check the read operation was correct
+ if (!off_reader.is_valid()) {
+ std::cerr << "Unable to read file " << off_file_name << std::endl;
+ }
// Read the point file
- Point_Vector point_vector;
- read_points_cust(file_name, point_vector);
+ Point_Vector point_vector = off_reader.get_point_cloud();
std::cout << "Successfully read " << point_vector.size() << " points.\n";
std::cout << "Ambient dimension is " << point_vector[0].size() << ".\n";
// Choose landmarks
start = clock();
std::vector<std::vector< int > > knn;
- Gudhi::witness_complex::landmark_choice_by_random_point(point_vector, nbL, knn);
+ Point_Vector landmarks;
+ Gudhi::subsampling::pick_n_random_points(point_vector, 100, std::back_inserter(landmarks));
+ Gudhi::witness_complex::construct_closest_landmark_table(point_vector, landmarks, knn);
end = clock();
std::cout << "Landmark choice for " << nbL << " landmarks took "
<< static_cast<double>(end - start) / CLOCKS_PER_SEC << " s. \n";