diff options
Diffstat (limited to 'src/cmake/modules/GUDHI_third_party_libraries.cmake')
| -rw-r--r-- | src/cmake/modules/GUDHI_third_party_libraries.cmake | 229 |
1 files changed, 104 insertions, 125 deletions
diff --git a/src/cmake/modules/GUDHI_third_party_libraries.cmake b/src/cmake/modules/GUDHI_third_party_libraries.cmake index 0abe66b7..2cf6787e 100644 --- a/src/cmake/modules/GUDHI_third_party_libraries.cmake +++ b/src/cmake/modules/GUDHI_third_party_libraries.cmake @@ -1,42 +1,14 @@ # This files manage third party libraries required by GUDHI -find_package(Boost 1.56.0 REQUIRED COMPONENTS system filesystem unit_test_framework program_options thread) +find_package(Boost 1.66.0 QUIET OPTIONAL_COMPONENTS filesystem unit_test_framework program_options) -if(NOT Boost_FOUND) +# Boost_FOUND is not reliable +if(NOT Boost_VERSION) message(FATAL_ERROR "NOTICE: This program requires Boost and will not be compiled.") -endif(NOT Boost_FOUND) - -# cf. https://cliutils.gitlab.io/modern-cmake/chapters/packages/Boost.html -# This is needed if your Boost version is newer than your CMake version -# or if you have an old version of CMake (<3.5) -if(NOT TARGET Boost::program_options) - add_library(Boost::program_options IMPORTED INTERFACE) - set_property(TARGET Boost::program_options PROPERTY - INTERFACE_INCLUDE_DIRECTORIES ${Boost_INCLUDE_DIR}) - set_property(TARGET Boost::program_options PROPERTY - INTERFACE_LINK_LIBRARIES ${Boost_LIBRARIES}) -endif() -if(NOT TARGET Boost::filesystem) - add_library(Boost::filesystem IMPORTED INTERFACE) - set_property(TARGET Boost::filesystem PROPERTY - INTERFACE_INCLUDE_DIRECTORIES ${Boost_INCLUDE_DIR}) - set_property(TARGET Boost::filesystem PROPERTY - INTERFACE_LINK_LIBRARIES ${Boost_LIBRARIES}) -endif() -if(NOT TARGET Boost::unit_test_framework) - add_library(Boost::unit_test_framework IMPORTED INTERFACE) - set_property(TARGET Boost::unit_test_framework PROPERTY - INTERFACE_INCLUDE_DIRECTORIES ${Boost_INCLUDE_DIR}) - set_property(TARGET Boost::unit_test_framework PROPERTY - INTERFACE_LINK_LIBRARIES ${Boost_LIBRARIES}) -endif() -if(NOT TARGET Boost::system) - add_library(Boost::system IMPORTED INTERFACE) - set_property(TARGET Boost::system PROPERTY - INTERFACE_INCLUDE_DIRECTORIES ${Boost_INCLUDE_DIR}) - set_property(TARGET Boost::system PROPERTY - INTERFACE_LINK_LIBRARIES ${Boost_LIBRARIES}) -endif() +endif(NOT Boost_VERSION) +include_directories(${Boost_INCLUDE_DIRS}) +message(STATUS "boost include dirs:" ${Boost_INCLUDE_DIRS}) +message(STATUS "boost library dirs:" ${Boost_LIBRARY_DIRS}) find_package(GMP) if(GMP_FOUND) @@ -47,6 +19,15 @@ if(GMP_FOUND) endif() endif() +# from windows vcpkg eigen 3.4.0#2 : build fails with +# error C2440: '<function-style-cast>': cannot convert from 'Eigen::EigenBase<Derived>::Index' to '__gmp_expr<mpq_t,mpq_t>' +# cf. https://gitlab.com/libeigen/eigen/-/issues/2476 +# Workaround is to compile with '-DEIGEN_DEFAULT_DENSE_INDEX_TYPE=int' +if (FORCE_EIGEN_DEFAULT_DENSE_INDEX_TYPE_TO_INT) + message("++ User explicit demand to force EIGEN_DEFAULT_DENSE_INDEX_TYPE to int") + add_definitions(-DEIGEN_DEFAULT_DENSE_INDEX_TYPE=int) +endif() + # In CMakeLists.txt, when include(${CGAL_USE_FILE}), CMAKE_CXX_FLAGS are overwritten. # cf. http://doc.cgal.org/latest/Manual/installation.html#title40 # A workaround is to include(${CGAL_USE_FILE}) before adding "-std=c++11". @@ -67,9 +48,6 @@ if(CGAL_FOUND) include( ${CGAL_USE_FILE} ) endif() -# For those who dislike bundled dependencies, this indicates where to find a preinstalled Hera. -set(HERA_WASSERSTEIN_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/wasserstein/include CACHE PATH "Directory where one can find Hera's wasserstein.h") - option(WITH_GUDHI_USE_TBB "Build with Intel TBB parallelization" ON) # Find TBB package for parallel sort - not mandatory, just optional. @@ -117,91 +95,92 @@ add_definitions( -DBOOST_ALL_DYN_LINK ) # problem on Mac with boost_system and boost_thread add_definitions( -DBOOST_SYSTEM_NO_DEPRECATED ) -message(STATUS "boost include dirs:" ${Boost_INCLUDE_DIRS}) -message(STATUS "boost library dirs:" ${Boost_LIBRARY_DIRS}) - -# Find the correct Python interpreter. -# Can be set with -DPYTHON_EXECUTABLE=/usr/bin/python3 or -DPython_ADDITIONAL_VERSIONS=3 for instance. -find_package( PythonInterp ) - -# find_python_module tries to import module in Python interpreter and to retrieve its version number -# returns ${PYTHON_MODULE_NAME_UP}_VERSION and ${PYTHON_MODULE_NAME_UP}_FOUND -function( find_python_module PYTHON_MODULE_NAME ) - string(TOUPPER ${PYTHON_MODULE_NAME} PYTHON_MODULE_NAME_UP) - execute_process( - COMMAND ${PYTHON_EXECUTABLE} -c "import ${PYTHON_MODULE_NAME}; print(${PYTHON_MODULE_NAME}.__version__)" - RESULT_VARIABLE PYTHON_MODULE_RESULT - OUTPUT_VARIABLE PYTHON_MODULE_VERSION - ERROR_VARIABLE PYTHON_MODULE_ERROR) - if(PYTHON_MODULE_RESULT EQUAL 0) - # Remove carriage return - string(STRIP ${PYTHON_MODULE_VERSION} PYTHON_MODULE_VERSION) - message ("++ Python module ${PYTHON_MODULE_NAME} - Version ${PYTHON_MODULE_VERSION} found") - - set(${PYTHON_MODULE_NAME_UP}_VERSION ${PYTHON_MODULE_VERSION} PARENT_SCOPE) - set(${PYTHON_MODULE_NAME_UP}_FOUND TRUE PARENT_SCOPE) - else() - message ("PYTHON_MODULE_NAME = ${PYTHON_MODULE_NAME} - - PYTHON_MODULE_RESULT = ${PYTHON_MODULE_RESULT} - - PYTHON_MODULE_VERSION = ${PYTHON_MODULE_VERSION} - - PYTHON_MODULE_ERROR = ${PYTHON_MODULE_ERROR}") - unset(${PYTHON_MODULE_NAME_UP}_VERSION PARENT_SCOPE) - set(${PYTHON_MODULE_NAME_UP}_FOUND FALSE PARENT_SCOPE) +if (WITH_GUDHI_PYTHON) + # Find the correct Python interpreter. + # Can be set with -DPYTHON_EXECUTABLE=/usr/bin/python3 or -DPython_ADDITIONAL_VERSIONS=3 for instance. + find_package( PythonInterp ) + + # find_python_module tries to import module in Python interpreter and to retrieve its version number + # returns ${PYTHON_MODULE_NAME_UP}_VERSION and ${PYTHON_MODULE_NAME_UP}_FOUND + function( find_python_module PYTHON_MODULE_NAME ) + string(TOUPPER ${PYTHON_MODULE_NAME} PYTHON_MODULE_NAME_UP) + execute_process( + COMMAND ${PYTHON_EXECUTABLE} -c "import ${PYTHON_MODULE_NAME}; print(${PYTHON_MODULE_NAME}.__version__)" + RESULT_VARIABLE PYTHON_MODULE_RESULT + OUTPUT_VARIABLE PYTHON_MODULE_VERSION + ERROR_VARIABLE PYTHON_MODULE_ERROR) + if(PYTHON_MODULE_RESULT EQUAL 0) + # Remove all carriage returns as it can be multiline + string(REGEX REPLACE "\n" " " PYTHON_MODULE_VERSION "${PYTHON_MODULE_VERSION}") + message ("++ Python module ${PYTHON_MODULE_NAME} - Version ${PYTHON_MODULE_VERSION} found") + + set(${PYTHON_MODULE_NAME_UP}_VERSION ${PYTHON_MODULE_VERSION} PARENT_SCOPE) + set(${PYTHON_MODULE_NAME_UP}_FOUND TRUE PARENT_SCOPE) + else() + message ("PYTHON_MODULE_NAME = ${PYTHON_MODULE_NAME} + - PYTHON_MODULE_RESULT = ${PYTHON_MODULE_RESULT} + - PYTHON_MODULE_VERSION = ${PYTHON_MODULE_VERSION} + - PYTHON_MODULE_ERROR = ${PYTHON_MODULE_ERROR}") + unset(${PYTHON_MODULE_NAME_UP}_VERSION PARENT_SCOPE) + set(${PYTHON_MODULE_NAME_UP}_FOUND FALSE PARENT_SCOPE) + endif() + endfunction( find_python_module ) + + # For modules that do not define module.__version__ + function( find_python_module_no_version PYTHON_MODULE_NAME ) + string(TOUPPER ${PYTHON_MODULE_NAME} PYTHON_MODULE_NAME_UP) + execute_process( + COMMAND ${PYTHON_EXECUTABLE} -c "import ${PYTHON_MODULE_NAME}" + RESULT_VARIABLE PYTHON_MODULE_RESULT + ERROR_VARIABLE PYTHON_MODULE_ERROR) + if(PYTHON_MODULE_RESULT EQUAL 0) + # Remove carriage return + message ("++ Python module ${PYTHON_MODULE_NAME} found") + set(${PYTHON_MODULE_NAME_UP}_FOUND TRUE PARENT_SCOPE) + else() + message ("PYTHON_MODULE_NAME = ${PYTHON_MODULE_NAME} + - PYTHON_MODULE_RESULT = ${PYTHON_MODULE_RESULT} + - PYTHON_MODULE_ERROR = ${PYTHON_MODULE_ERROR}") + set(${PYTHON_MODULE_NAME_UP}_FOUND FALSE PARENT_SCOPE) + endif() + endfunction( find_python_module_no_version ) + + if( PYTHONINTERP_FOUND ) + find_python_module("cython") + find_python_module("pytest") + find_python_module("matplotlib") + find_python_module("numpy") + find_python_module("scipy") + find_python_module("sphinx") + find_python_module("sklearn") + find_python_module("ot") + find_python_module("pybind11") + find_python_module("torch") + find_python_module("pykeops") + find_python_module("eagerpy") + find_python_module_no_version("hnswlib") + find_python_module("tensorflow") + find_python_module("sphinx_paramlinks") + find_python_module_no_version("python_docs_theme") endif() -endfunction( find_python_module ) - -# For modules that do not define module.__version__ -function( find_python_module_no_version PYTHON_MODULE_NAME ) - string(TOUPPER ${PYTHON_MODULE_NAME} PYTHON_MODULE_NAME_UP) - execute_process( - COMMAND ${PYTHON_EXECUTABLE} -c "import ${PYTHON_MODULE_NAME}" - RESULT_VARIABLE PYTHON_MODULE_RESULT - ERROR_VARIABLE PYTHON_MODULE_ERROR) - if(PYTHON_MODULE_RESULT EQUAL 0) - # Remove carriage return - message ("++ Python module ${PYTHON_MODULE_NAME} found") - set(${PYTHON_MODULE_NAME_UP}_FOUND TRUE PARENT_SCOPE) - else() - message ("PYTHON_MODULE_NAME = ${PYTHON_MODULE_NAME} - - PYTHON_MODULE_RESULT = ${PYTHON_MODULE_RESULT} - - PYTHON_MODULE_ERROR = ${PYTHON_MODULE_ERROR}") - set(${PYTHON_MODULE_NAME_UP}_FOUND FALSE PARENT_SCOPE) - endif() -endfunction( find_python_module_no_version ) - -if( PYTHONINTERP_FOUND ) - find_python_module("cython") - find_python_module("pytest") - find_python_module("matplotlib") - find_python_module("numpy") - find_python_module("scipy") - find_python_module("sphinx") - find_python_module("sklearn") - find_python_module("ot") - find_python_module("pybind11") - find_python_module("torch") - find_python_module("pykeops") - find_python_module("eagerpy") - find_python_module_no_version("hnswlib") -endif() - -if(NOT GUDHI_PYTHON_PATH) - message(FATAL_ERROR "ERROR: GUDHI_PYTHON_PATH is not valid.") -endif(NOT GUDHI_PYTHON_PATH) - -option(WITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS "Build with setting runtime_library_dirs. Usefull when setting rpath is not allowed" ON) - -if(PYTHONINTERP_FOUND AND CYTHON_FOUND) - if(SPHINX_FOUND) - # Documentation generation is available through sphinx - find_program( SPHINX_PATH sphinx-build ) - - if(NOT SPHINX_PATH) - if(PYTHON_VERSION_MAJOR EQUAL 3) - # In Python3, just hack sphinx-build if it does not exist - set(SPHINX_PATH "${PYTHON_EXECUTABLE}" "${CMAKE_CURRENT_SOURCE_DIR}/${GUDHI_PYTHON_PATH}/doc/python3-sphinx-build.py") - endif(PYTHON_VERSION_MAJOR EQUAL 3) - endif(NOT SPHINX_PATH) - endif(SPHINX_FOUND) -endif(PYTHONINTERP_FOUND AND CYTHON_FOUND) - + + if(NOT GUDHI_PYTHON_PATH) + message(FATAL_ERROR "ERROR: GUDHI_PYTHON_PATH is not valid.") + endif(NOT GUDHI_PYTHON_PATH) + + option(WITH_GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS "Build with setting runtime_library_dirs. Useful when setting rpath is not allowed" ON) + + if(PYTHONINTERP_FOUND AND CYTHON_FOUND) + if(SPHINX_FOUND) + # Documentation generation is available through sphinx + find_program( SPHINX_PATH sphinx-build ) + + if(NOT SPHINX_PATH) + if(PYTHON_VERSION_MAJOR EQUAL 3) + # In Python3, just hack sphinx-build if it does not exist + set(SPHINX_PATH "${PYTHON_EXECUTABLE}" "-m" "sphinx.cmd.build") + endif(PYTHON_VERSION_MAJOR EQUAL 3) + endif(NOT SPHINX_PATH) + endif(SPHINX_FOUND) + endif(PYTHONINTERP_FOUND AND CYTHON_FOUND) +endif (WITH_GUDHI_PYTHON) |