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-rw-r--r--src/cmake/modules/GUDHI_third_party_libraries.cmake7
-rw-r--r--src/cmake/modules/GUDHI_user_version_target.cmake20
2 files changed, 21 insertions, 6 deletions
diff --git a/src/cmake/modules/GUDHI_third_party_libraries.cmake b/src/cmake/modules/GUDHI_third_party_libraries.cmake
index 0abe66b7..a56a2756 100644
--- a/src/cmake/modules/GUDHI_third_party_libraries.cmake
+++ b/src/cmake/modules/GUDHI_third_party_libraries.cmake
@@ -68,7 +68,10 @@ if(CGAL_FOUND)
endif()
# For those who dislike bundled dependencies, this indicates where to find a preinstalled Hera.
-set(HERA_WASSERSTEIN_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/wasserstein/include CACHE PATH "Directory where one can find Hera's wasserstein.h")
+set(HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/wasserstein/include)
+set(HERA_WASSERSTEIN_INCLUDE_DIR ${HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's wasserstein.h")
+set(HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/ext/hera/bottleneck/include)
+set(HERA_BOTTLENECK_INCLUDE_DIR ${HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR} CACHE PATH "Directory where one can find Hera's bottleneck.h")
option(WITH_GUDHI_USE_TBB "Build with Intel TBB parallelization" ON)
@@ -199,7 +202,7 @@ if(PYTHONINTERP_FOUND AND CYTHON_FOUND)
if(NOT SPHINX_PATH)
if(PYTHON_VERSION_MAJOR EQUAL 3)
# In Python3, just hack sphinx-build if it does not exist
- set(SPHINX_PATH "${PYTHON_EXECUTABLE}" "${CMAKE_CURRENT_SOURCE_DIR}/${GUDHI_PYTHON_PATH}/doc/python3-sphinx-build.py")
+ set(SPHINX_PATH "${PYTHON_EXECUTABLE}" "-m" "sphinx.cmd.build")
endif(PYTHON_VERSION_MAJOR EQUAL 3)
endif(NOT SPHINX_PATH)
endif(SPHINX_FOUND)
diff --git a/src/cmake/modules/GUDHI_user_version_target.cmake b/src/cmake/modules/GUDHI_user_version_target.cmake
index 9cf648e3..e4f39aae 100644
--- a/src/cmake/modules/GUDHI_user_version_target.cmake
+++ b/src/cmake/modules/GUDHI_user_version_target.cmake
@@ -49,8 +49,17 @@ add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
copy ${CMAKE_SOURCE_DIR}/CMakeGUDHIVersion.txt ${GUDHI_USER_VERSION_DIR}/CMakeGUDHIVersion.txt)
-add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
- copy_directory ${CMAKE_SOURCE_DIR}/${GUDHI_PYTHON_PATH} ${GUDHI_USER_VERSION_DIR}/python)
+# As cython generates .cpp files in source, we have to copy all except cpp files from python directory
+file(GLOB_RECURSE PYTHON_FILES ${CMAKE_SOURCE_DIR}/${GUDHI_PYTHON_PATH}/*)
+foreach(PYTHON_FILE ${PYTHON_FILES})
+ get_filename_component(PYTHON_FILE_EXT ${PYTHON_FILE} EXT)
+ if (NOT "${PYTHON_FILE_EXT}" STREQUAL ".cpp")
+ string(REPLACE "${CMAKE_SOURCE_DIR}/${GUDHI_PYTHON_PATH}/" "" RELATIVE_PYTHON_FILE ${PYTHON_FILE})
+ add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
+ copy ${PYTHON_FILE} ${GUDHI_USER_VERSION_DIR}/python/${RELATIVE_PYTHON_FILE})
+ endif()
+endforeach()
+
add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
copy_directory ${CMAKE_SOURCE_DIR}/data ${GUDHI_USER_VERSION_DIR}/data)
add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
@@ -58,8 +67,11 @@ add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
copy_directory ${CMAKE_SOURCE_DIR}/src/GudhUI ${GUDHI_USER_VERSION_DIR}/GudhUI)
-add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
- copy_directory ${CMAKE_SOURCE_DIR}/ext/hera/wasserstein/include ${GUDHI_USER_VERSION_DIR}/ext/hera/wasserstein/include)
+if(HERA_WASSERSTEIN_INCLUDE_DIR STREQUAL HERA_WASSERSTEIN_INTERNAL_INCLUDE_DIR OR
+ HERA_BOTTLENECK_INCLUDE_DIR STREQUAL HERA_BOTTLENECK_INTERNAL_INCLUDE_DIR)
+ add_custom_command(TARGET user_version PRE_BUILD COMMAND ${CMAKE_COMMAND} -E
+ copy_directory ${CMAKE_SOURCE_DIR}/ext/hera ${GUDHI_USER_VERSION_DIR}/ext/hera)
+endif()
set(GUDHI_DIRECTORIES "doc;example;concept;utilities")