diff options
Diffstat (limited to 'src/cython/doc/persistence_graphical_tools_user.rst')
| -rw-r--r-- | src/cython/doc/persistence_graphical_tools_user.rst | 25 |
1 files changed, 23 insertions, 2 deletions
diff --git a/src/cython/doc/persistence_graphical_tools_user.rst b/src/cython/doc/persistence_graphical_tools_user.rst index 43c695bf..1a5195c5 100644 --- a/src/cython/doc/persistence_graphical_tools_user.rst +++ b/src/cython/doc/persistence_graphical_tools_user.rst @@ -17,6 +17,11 @@ This function is useful to show the color palette values of dimension: import gudhi gudhi.show_palette_values(alpha=1.0) +.. plot:: + + import gudhi + gudhi.show_palette_values(alpha=1.0) + Show persistence as a barcode ----------------------------- @@ -30,6 +35,13 @@ This function can display the persistence result as a barcode: diag = periodic_cc.persistence() gudhi.barcode_persistence(diag) +.. plot:: + + import gudhi + + periodic_cc = gudhi.PeriodicCubicalComplex(perseus_file='3d_torus.txt') + diag = periodic_cc.persistence() + gudhi.barcode_persistence(diag) Show persistence as a diagram ----------------------------- @@ -40,7 +52,16 @@ This function can display the persistence result as a diagram: import gudhi - alpha_complex = gudhi.AlphaComplex(off_file='tore3D_300.off') - simplex_tree = alpha_complex.create_simplex_tree() + rips_complex = gudhi.RipsComplex(off_file='tore3D_300.off', max_edge_length=2.0) + simplex_tree = rips_complex.create_simplex_tree(max_dimension=3) + diag = simplex_tree.persistence() + gudhi.diagram_persistence(diag) + +.. plot:: + + import gudhi + + rips_complex = gudhi.RipsComplex(off_file='tore3D_300.off', max_edge_length=2.0) + simplex_tree = rips_complex.create_simplex_tree(max_dimension=3) diag = simplex_tree.persistence() gudhi.diagram_persistence(diag) |