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-rw-r--r--src/cython/doc/rips_complex_user.rst157
1 files changed, 80 insertions, 77 deletions
diff --git a/src/cython/doc/rips_complex_user.rst b/src/cython/doc/rips_complex_user.rst
index c89409a0..f9760976 100644
--- a/src/cython/doc/rips_complex_user.rst
+++ b/src/cython/doc/rips_complex_user.rst
@@ -1,4 +1,3 @@
-=========================
Rips complex user manual
=========================
Definition
@@ -60,8 +59,9 @@ Finally, it is asked to display information about the simplicial complex.
repr(simplex_tree.num_simplices()) + ' simplices - ' + \
repr(simplex_tree.num_vertices()) + ' vertices.'
print(result_str)
+ fmt = '%s -> %.2f'
for filtered_value in simplex_tree.get_filtration():
- print(filtered_value)
+ print(fmt % tuple(filtered_value))
When launching (Rips maximal distance between 2 points is 12.0, is expanded
until dimension 1 - one skeleton graph in other words), the output is:
@@ -69,24 +69,24 @@ until dimension 1 - one skeleton graph in other words), the output is:
.. testoutput::
Rips complex is of dimension 1 - 18 simplices - 7 vertices.
- ([0], 0.0)
- ([1], 0.0)
- ([2], 0.0)
- ([3], 0.0)
- ([4], 0.0)
- ([5], 0.0)
- ([6], 0.0)
- ([2, 3], 5.0)
- ([4, 5], 5.385164807134504)
- ([0, 2], 5.830951894845301)
- ([0, 1], 6.082762530298219)
- ([1, 3], 6.324555320336759)
- ([1, 2], 6.708203932499369)
- ([5, 6], 7.280109889280518)
- ([2, 4], 8.94427190999916)
- ([0, 3], 9.433981132056603)
- ([4, 6], 9.486832980505138)
- ([3, 6], 11.0)
+ [0] -> 0.00
+ [1] -> 0.00
+ [2] -> 0.00
+ [3] -> 0.00
+ [4] -> 0.00
+ [5] -> 0.00
+ [6] -> 0.00
+ [2, 3] -> 5.00
+ [4, 5] -> 5.39
+ [0, 2] -> 5.83
+ [0, 1] -> 6.08
+ [1, 3] -> 6.32
+ [1, 2] -> 6.71
+ [5, 6] -> 7.28
+ [2, 4] -> 8.94
+ [0, 3] -> 9.43
+ [4, 6] -> 9.49
+ [3, 6] -> 11.00
Example from OFF file
^^^^^^^^^^^^^^^^^^^^^
@@ -107,32 +107,33 @@ Finally, it is asked to display information about the Rips complex.
repr(simplex_tree.num_simplices()) + ' simplices - ' + \
repr(simplex_tree.num_vertices()) + ' vertices.'
print(result_str)
+ fmt = '%s -> %.2f'
for filtered_value in simplex_tree.get_filtration():
- print(filtered_value)
+ print(fmt % tuple(filtered_value))
the program output is:
.. testoutput::
Rips complex is of dimension 1 - 18 simplices - 7 vertices.
- ([0], 0.0)
- ([1], 0.0)
- ([2], 0.0)
- ([3], 0.0)
- ([4], 0.0)
- ([5], 0.0)
- ([6], 0.0)
- ([2, 3], 5.0)
- ([4, 5], 5.385164807134504)
- ([0, 2], 5.830951894845301)
- ([0, 1], 6.082762530298219)
- ([1, 3], 6.324555320336759)
- ([1, 2], 6.708203932499369)
- ([5, 6], 7.280109889280518)
- ([2, 4], 8.94427190999916)
- ([0, 3], 9.433981132056603)
- ([4, 6], 9.486832980505138)
- ([3, 6], 11.0)
+ [0] -> 0.00
+ [1] -> 0.00
+ [2] -> 0.00
+ [3] -> 0.00
+ [4] -> 0.00
+ [5] -> 0.00
+ [6] -> 0.00
+ [2, 3] -> 5.00
+ [4, 5] -> 5.39
+ [0, 2] -> 5.83
+ [0, 1] -> 6.08
+ [1, 3] -> 6.32
+ [1, 2] -> 6.71
+ [5, 6] -> 7.28
+ [2, 4] -> 8.94
+ [0, 3] -> 9.43
+ [4, 6] -> 9.49
+ [3, 6] -> 11.00
Distance matrix
---------------
@@ -162,8 +163,9 @@ Finally, it is asked to display information about the simplicial complex.
repr(simplex_tree.num_simplices()) + ' simplices - ' + \
repr(simplex_tree.num_vertices()) + ' vertices.'
print(result_str)
+ fmt = '%s -> %.2f'
for filtered_value in simplex_tree.get_filtration():
- print(filtered_value)
+ print(fmt % tuple(filtered_value))
When launching (Rips maximal distance between 2 points is 12.0, is expanded
until dimension 1 - one skeleton graph in other words), the output is:
@@ -171,24 +173,24 @@ until dimension 1 - one skeleton graph in other words), the output is:
.. testoutput::
Rips complex is of dimension 1 - 18 simplices - 7 vertices.
- ([0], 0.0)
- ([1], 0.0)
- ([2], 0.0)
- ([3], 0.0)
- ([4], 0.0)
- ([5], 0.0)
- ([6], 0.0)
- ([2, 3], 5.0)
- ([4, 5], 5.3851648071)
- ([0, 2], 5.8309518948)
- ([0, 1], 6.0827625303)
- ([1, 3], 6.3245553203)
- ([1, 2], 6.7082039325)
- ([5, 6], 7.2801098893)
- ([2, 4], 8.94427191)
- ([0, 3], 9.4339811321)
- ([4, 6], 9.4868329805)
- ([3, 6], 11.0)
+ [0] -> 0.00
+ [1] -> 0.00
+ [2] -> 0.00
+ [3] -> 0.00
+ [4] -> 0.00
+ [5] -> 0.00
+ [6] -> 0.00
+ [2, 3] -> 5.00
+ [4, 5] -> 5.39
+ [0, 2] -> 5.83
+ [0, 1] -> 6.08
+ [1, 3] -> 6.32
+ [1, 2] -> 6.71
+ [5, 6] -> 7.28
+ [2, 4] -> 8.94
+ [0, 3] -> 9.43
+ [4, 6] -> 9.49
+ [3, 6] -> 11.00
Example from csv file
^^^^^^^^^^^^^^^^^^^^^
@@ -209,29 +211,30 @@ Finally, it is asked to display information about the Rips complex.
repr(simplex_tree.num_simplices()) + ' simplices - ' + \
repr(simplex_tree.num_vertices()) + ' vertices.'
print(result_str)
+ fmt = '%s -> %.2f'
for filtered_value in simplex_tree.get_filtration():
- print(filtered_value)
+ print(fmt % tuple(filtered_value))
the program output is:
.. testoutput::
Rips complex is of dimension 1 - 18 simplices - 7 vertices.
- ([0], 0.0)
- ([1], 0.0)
- ([2], 0.0)
- ([3], 0.0)
- ([4], 0.0)
- ([5], 0.0)
- ([6], 0.0)
- ([2, 3], 5.0)
- ([4, 5], 5.3851648071)
- ([0, 2], 5.8309518948)
- ([0, 1], 6.0827625303)
- ([1, 3], 6.3245553203)
- ([1, 2], 6.7082039325)
- ([5, 6], 7.2801098893)
- ([2, 4], 8.94427191)
- ([0, 3], 9.4339811321)
- ([4, 6], 9.4868329805)
- ([3, 6], 11.0)
+ [0] -> 0.00
+ [1] -> 0.00
+ [2] -> 0.00
+ [3] -> 0.00
+ [4] -> 0.00
+ [5] -> 0.00
+ [6] -> 0.00
+ [2, 3] -> 5.00
+ [4, 5] -> 5.39
+ [0, 2] -> 5.83
+ [0, 1] -> 6.08
+ [1, 3] -> 6.32
+ [1, 2] -> 6.71
+ [5, 6] -> 7.28
+ [2, 4] -> 8.94
+ [0, 3] -> 9.43
+ [4, 6] -> 9.49
+ [3, 6] -> 11.00
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