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-rwxr-xr-xsrc/cython/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py52
1 files changed, 25 insertions, 27 deletions
diff --git a/src/cython/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py b/src/cython/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py
index 5f968bf1..9cb855cd 100755
--- a/src/cython/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py
+++ b/src/cython/example/periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py
@@ -3,34 +3,23 @@
import gudhi
import argparse
-"""This file is part of the Gudhi Library. The Gudhi library
- (Geometric Understanding in Higher Dimensions) is a generic C++
- library for computational topology.
+""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+ See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+ Author(s): Vincent Rouvreau
- Author(s): Vincent Rouvreau
+ Copyright (C) 2016 Inria
- Copyright (C) 2016 Inria
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
+ Modification(s):
+ - YYYY/MM Author: Description of the modification
"""
__author__ = "Vincent Rouvreau"
__copyright__ = "Copyright (C) 2016 Inria"
-__license__ = "GPL v3"
+__license__ = "MIT"
+
def is_file_perseus(file):
- num_lines = open(file).read().count('\n')
+ num_lines = open(file).read().count("\n")
try:
f = open(file)
num_dim = int(f.readline())
@@ -48,14 +37,21 @@ def is_file_perseus(file):
except ValueError:
return False
-parser = argparse.ArgumentParser(description='Periodic cubical complex from a '
- 'Perseus-style file name.',
- epilog='Example: '
- './periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py'
- ' -f ../data/bitmap/CubicalTwoSphere.txt')
+
+parser = argparse.ArgumentParser(
+ description="Periodic cubical complex from a " "Perseus-style file name.",
+ epilog="Example: "
+ "./periodic_cubical_complex_barcode_persistence_from_perseus_file_example.py"
+ " -f ../data/bitmap/CubicalTwoSphere.txt",
+)
parser.add_argument("-f", "--file", type=str, required=True)
-parser.add_argument('--no-barcode', default=False, action='store_true' , help='Flag for not to display the barcodes')
+parser.add_argument(
+ "--no-barcode",
+ default=False,
+ action="store_true",
+ help="Flag for not to display the barcodes",
+)
args = parser.parse_args()
@@ -65,7 +61,9 @@ if is_file_perseus(args.file):
periodic_cubical_complex = gudhi.PeriodicCubicalComplex(perseus_file=args.file)
print("persistence(homology_coeff_field=3, min_persistence=0)=")
- diag = periodic_cubical_complex.persistence(homology_coeff_field=3, min_persistence=0)
+ diag = periodic_cubical_complex.persistence(
+ homology_coeff_field=3, min_persistence=0
+ )
print(diag)
print("betti_numbers()=")