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-rwxr-xr-xsrc/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py56
1 files changed, 26 insertions, 30 deletions
diff --git a/src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py b/src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py
index 4d2ed577..0b9a9ba9 100755
--- a/src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py
+++ b/src/cython/example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py
@@ -3,44 +3,38 @@
import gudhi
import argparse
-"""This file is part of the Gudhi Library. The Gudhi library
- (Geometric Understanding in Higher Dimensions) is a generic C++
- library for computational topology.
+""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+ See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+ Author(s): Vincent Rouvreau
- Author(s): Vincent Rouvreau
+ Copyright (C) 2016 Inria
- Copyright (C) 2016 Inria
-
- This program is free software: you can redistribute it and/or modify
- it under the terms of the GNU General Public License as published by
- the Free Software Foundation, either version 3 of the License, or
- (at your option) any later version.
-
- This program is distributed in the hope that it will be useful,
- but WITHOUT ANY WARRANTY; without even the implied warranty of
- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- GNU General Public License for more details.
-
- You should have received a copy of the GNU General Public License
- along with this program. If not, see <http://www.gnu.org/licenses/>.
+ Modification(s):
+ - YYYY/MM Author: Description of the modification
"""
__author__ = "Vincent Rouvreau"
__copyright__ = "Copyright (C) 2016 Inria"
-__license__ = "GPL v3"
-
-parser = argparse.ArgumentParser(description='RipsComplex creation from '
- 'a distance matrix read in a csv file.',
- epilog='Example: '
- 'example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py '
- '-f ../data/distance_matrix/lower_triangular_distance_matrix.csv -e 12.0 -d 3'
- '- Constructs a Rips complex with the '
- 'distance matrix from the given csv file.')
+__license__ = "MIT"
+
+parser = argparse.ArgumentParser(
+ description="RipsComplex creation from " "a distance matrix read in a csv file.",
+ epilog="Example: "
+ "example/rips_complex_diagram_persistence_from_distance_matrix_file_example.py "
+ "-f ../data/distance_matrix/lower_triangular_distance_matrix.csv -e 12.0 -d 3"
+ "- Constructs a Rips complex with the "
+ "distance matrix from the given csv file.",
+)
parser.add_argument("-f", "--file", type=str, required=True)
parser.add_argument("-e", "--max_edge_length", type=float, default=0.5)
parser.add_argument("-d", "--max_dimension", type=int, default=1)
-parser.add_argument("-b", "--band", type=float, default=0.)
-parser.add_argument('--no-diagram', default=False, action='store_true' , help='Flag for not to display the diagrams')
+parser.add_argument("-b", "--band", type=float, default=0.0)
+parser.add_argument(
+ "--no-diagram",
+ default=False,
+ action="store_true",
+ help="Flag for not to display the diagrams",
+)
args = parser.parse_args()
@@ -51,7 +45,9 @@ message = "RipsComplex with max_edge_length=" + repr(args.max_edge_length)
print(message)
distance_matrix = gudhi.read_lower_triangular_matrix_from_csv_file(csv_file=args.file)
-rips_complex = gudhi.RipsComplex(distance_matrix=distance_matrix, max_edge_length=args.max_edge_length)
+rips_complex = gudhi.RipsComplex(
+ distance_matrix=distance_matrix, max_edge_length=args.max_edge_length
+)
simplex_tree = rips_complex.create_simplex_tree(max_dimension=args.max_dimension)
message = "Number of simplices=" + repr(simplex_tree.num_simplices())