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-rwxr-xr-xsrc/cython/example/rips_complex_diagram_persistence_from_off_file_example.py48
1 files changed, 29 insertions, 19 deletions
diff --git a/src/cython/example/rips_complex_diagram_persistence_from_off_file_example.py b/src/cython/example/rips_complex_diagram_persistence_from_off_file_example.py
index e1f8b85d..2b335bba 100755
--- a/src/cython/example/rips_complex_diagram_persistence_from_off_file_example.py
+++ b/src/cython/example/rips_complex_diagram_persistence_from_off_file_example.py
@@ -17,42 +17,52 @@ __author__ = "Vincent Rouvreau"
__copyright__ = "Copyright (C) 2016 Inria"
__license__ = "MIT"
-parser = argparse.ArgumentParser(description='RipsComplex creation from '
- 'points read in a OFF file.',
- epilog='Example: '
- 'example/rips_complex_diagram_persistence_from_off_file_example.py '
- '-f ../data/points/tore3D_300.off -a 0.6'
- '- Constructs a Rips complex with the '
- 'points from the given OFF file.')
+parser = argparse.ArgumentParser(
+ description="RipsComplex creation from " "points read in a OFF file.",
+ epilog="Example: "
+ "example/rips_complex_diagram_persistence_from_off_file_example.py "
+ "-f ../data/points/tore3D_300.off -a 0.6"
+ "- Constructs a Rips complex with the "
+ "points from the given OFF file.",
+)
parser.add_argument("-f", "--file", type=str, required=True)
parser.add_argument("-e", "--max_edge_length", type=float, default=0.5)
parser.add_argument("-d", "--max_dimension", type=int, default=1)
-parser.add_argument("-b", "--band", type=float, default=0.)
-parser.add_argument('--no-diagram', default=False, action='store_true' , help='Flag for not to display the diagrams')
+parser.add_argument("-b", "--band", type=float, default=0.0)
+parser.add_argument(
+ "--no-diagram",
+ default=False,
+ action="store_true",
+ help="Flag for not to display the diagrams",
+)
args = parser.parse_args()
-with open(args.file, 'r') as f:
+with open(args.file, "r") as f:
first_line = f.readline()
- if (first_line == 'OFF\n') or (first_line == 'nOFF\n'):
+ if (first_line == "OFF\n") or (first_line == "nOFF\n"):
print("#####################################################################")
print("RipsComplex creation from points read in a OFF file")
-
+
message = "RipsComplex with max_edge_length=" + repr(args.max_edge_length)
print(message)
-
+
point_cloud = gudhi.read_off(off_file=args.file)
- rips_complex = gudhi.RipsComplex(points=point_cloud, max_edge_length=args.max_edge_length)
- simplex_tree = rips_complex.create_simplex_tree(max_dimension=args.max_dimension)
-
+ rips_complex = gudhi.RipsComplex(
+ points=point_cloud, max_edge_length=args.max_edge_length
+ )
+ simplex_tree = rips_complex.create_simplex_tree(
+ max_dimension=args.max_dimension
+ )
+
message = "Number of simplices=" + repr(simplex_tree.num_simplices())
print(message)
-
+
diag = simplex_tree.persistence()
-
+
print("betti_numbers()=")
print(simplex_tree.betti_numbers())
-
+
if args.no_diagram == False:
pplot = gudhi.plot_persistence_diagram(diag, band=args.band)
pplot.show()