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-rwxr-xr-xsrc/python/example/diagram_vectorizations_distances_kernels.py19
1 files changed, 13 insertions, 6 deletions
diff --git a/src/python/example/diagram_vectorizations_distances_kernels.py b/src/python/example/diagram_vectorizations_distances_kernels.py
index c4a71a7a..2801576e 100755
--- a/src/python/example/diagram_vectorizations_distances_kernels.py
+++ b/src/python/example/diagram_vectorizations_distances_kernels.py
@@ -5,11 +5,11 @@ import numpy as np
from sklearn.kernel_approximation import RBFSampler
from sklearn.preprocessing import MinMaxScaler
-from gudhi.representations import DiagramSelector, Clamping, Landscape, Silhouette, BettiCurve, ComplexPolynomial,\
+from gudhi.representations import (DiagramSelector, Clamping, Landscape, Silhouette, BettiCurve, ComplexPolynomial,\
TopologicalVector, DiagramScaler, BirthPersistenceTransform,\
PersistenceImage, PersistenceWeightedGaussianKernel, Entropy, \
PersistenceScaleSpaceKernel, SlicedWassersteinDistance,\
- SlicedWassersteinKernel, BottleneckDistance, PersistenceFisherKernel, WassersteinDistance
+ SlicedWassersteinKernel, PersistenceFisherKernel, WassersteinDistance)
D1 = np.array([[0.,4.],[1.,2.],[3.,8.],[6.,8.], [0., np.inf], [5., np.inf]])
@@ -93,14 +93,21 @@ print("SW distance is " + str(sW(D1, D2)))
SW = SlicedWassersteinKernel(num_directions=100, bandwidth=1.)
print("SW kernel is " + str(SW(D1, D2)))
-W = WassersteinDistance(order=2, internal_p=2, mode="pot")
-print("Wasserstein distance (POT) is " + str(W(D1, D2)))
+try:
+ W = WassersteinDistance(order=2, internal_p=2, mode="pot")
+ print("Wasserstein distance (POT) is " + str(W(D1, D2)))
+except ImportError:
+ print("WassersteinDistance (POT) is not available, you may be missing pot.")
W = WassersteinDistance(order=2, internal_p=2, mode="hera", delta=0.0001)
print("Wasserstein distance (hera) is " + str(W(D1, D2)))
-W = BottleneckDistance(epsilon=.001)
-print("Bottleneck distance is " + str(W(D1, D2)))
+try:
+ from gudhi.representations import BottleneckDistance
+ W = BottleneckDistance(epsilon=.001)
+ print("Bottleneck distance is " + str(W(D1, D2)))
+except ImportError:
+ print("BottleneckDistance is not available, you may be missing CGAL.")
PF = PersistenceFisherKernel(bandwidth_fisher=1., bandwidth=1.)
print("PF kernel is " + str(PF(D1, D2)))