diff options
Diffstat (limited to 'src/python/gudhi/simplex_tree.pxd')
| -rw-r--r-- | src/python/gudhi/simplex_tree.pxd | 89 |
1 files changed, 44 insertions, 45 deletions
diff --git a/src/python/gudhi/simplex_tree.pxd b/src/python/gudhi/simplex_tree.pxd index 1d4ed926..e748ac40 100644 --- a/src/python/gudhi/simplex_tree.pxd +++ b/src/python/gudhi/simplex_tree.pxd @@ -25,57 +25,56 @@ cdef extern from "Simplex_tree_interface.h" namespace "Gudhi": pass cdef cppclass Simplex_tree_simplices_iterator "Gudhi::Simplex_tree_interface<Gudhi::Simplex_tree_options_full_featured>::Complex_simplex_iterator": - Simplex_tree_simplices_iterator() - Simplex_tree_simplex_handle& operator*() - Simplex_tree_simplices_iterator operator++() - bint operator!=(Simplex_tree_simplices_iterator) + Simplex_tree_simplices_iterator() nogil + Simplex_tree_simplex_handle& operator*() nogil + Simplex_tree_simplices_iterator operator++() nogil + bint operator!=(Simplex_tree_simplices_iterator) nogil cdef cppclass Simplex_tree_skeleton_iterator "Gudhi::Simplex_tree_interface<Gudhi::Simplex_tree_options_full_featured>::Skeleton_simplex_iterator": - Simplex_tree_skeleton_iterator() - Simplex_tree_simplex_handle& operator*() - Simplex_tree_skeleton_iterator operator++() - bint operator!=(Simplex_tree_skeleton_iterator) + Simplex_tree_skeleton_iterator() nogil + Simplex_tree_simplex_handle& operator*() nogil + Simplex_tree_skeleton_iterator operator++() nogil + bint operator!=(Simplex_tree_skeleton_iterator) nogil cdef cppclass Simplex_tree_interface_full_featured "Gudhi::Simplex_tree_interface<Gudhi::Simplex_tree_options_full_featured>": - Simplex_tree() - double simplex_filtration(vector[int] simplex) - void assign_simplex_filtration(vector[int] simplex, double filtration) - void initialize_filtration() - int num_vertices() - int num_simplices() - void set_dimension(int dimension) - int dimension() - int upper_bound_dimension() - bool find_simplex(vector[int] simplex) - bool insert(vector[int] simplex, double filtration) - vector[pair[vector[int], double]] get_star(vector[int] simplex) - vector[pair[vector[int], double]] get_cofaces(vector[int] simplex, - int dimension) - void expansion(int max_dim) except + - void remove_maximal_simplex(vector[int] simplex) - bool prune_above_filtration(double filtration) - bool make_filtration_non_decreasing() - void compute_extended_filtration() - vector[vector[pair[int, pair[double, double]]]] compute_extended_persistence_subdiagrams(vector[pair[int, pair[double, double]]] dgm, double min_persistence) + Simplex_tree() nogil + double simplex_filtration(vector[int] simplex) nogil + void assign_simplex_filtration(vector[int] simplex, double filtration) nogil + void initialize_filtration() nogil + int num_vertices() nogil + int num_simplices() nogil + void set_dimension(int dimension) nogil + int dimension() nogil + int upper_bound_dimension() nogil + bool find_simplex(vector[int] simplex) nogil + bool insert(vector[int] simplex, double filtration) nogil + vector[pair[vector[int], double]] get_star(vector[int] simplex) nogil + vector[pair[vector[int], double]] get_cofaces(vector[int] simplex, int dimension) nogil + void expansion(int max_dim) nogil except + + void remove_maximal_simplex(vector[int] simplex) nogil + bool prune_above_filtration(double filtration) nogil + bool make_filtration_non_decreasing() nogil + void compute_extended_filtration() nogil + vector[vector[pair[int, pair[double, double]]]] compute_extended_persistence_subdiagrams(vector[pair[int, pair[double, double]]] dgm, double min_persistence) nogil # Iterators over Simplex tree - pair[vector[int], double] get_simplex_and_filtration(Simplex_tree_simplex_handle f_simplex) - Simplex_tree_simplices_iterator get_simplices_iterator_begin() - Simplex_tree_simplices_iterator get_simplices_iterator_end() - vector[Simplex_tree_simplex_handle].const_iterator get_filtration_iterator_begin() - vector[Simplex_tree_simplex_handle].const_iterator get_filtration_iterator_end() - Simplex_tree_skeleton_iterator get_skeleton_iterator_begin(int dimension) - Simplex_tree_skeleton_iterator get_skeleton_iterator_end(int dimension) + pair[vector[int], double] get_simplex_and_filtration(Simplex_tree_simplex_handle f_simplex) nogil + Simplex_tree_simplices_iterator get_simplices_iterator_begin() nogil + Simplex_tree_simplices_iterator get_simplices_iterator_end() nogil + vector[Simplex_tree_simplex_handle].const_iterator get_filtration_iterator_begin() nogil + vector[Simplex_tree_simplex_handle].const_iterator get_filtration_iterator_end() nogil + Simplex_tree_skeleton_iterator get_skeleton_iterator_begin(int dimension) nogil + Simplex_tree_skeleton_iterator get_skeleton_iterator_end(int dimension) nogil cdef extern from "Persistent_cohomology_interface.h" namespace "Gudhi": cdef cppclass Simplex_tree_persistence_interface "Gudhi::Persistent_cohomology_interface<Gudhi::Simplex_tree<Gudhi::Simplex_tree_options_full_featured>>": - Simplex_tree_persistence_interface(Simplex_tree_interface_full_featured * st, bool persistence_dim_max) - void compute_persistence(int homology_coeff_field, double min_persistence) - vector[pair[int, pair[double, double]]] get_persistence() - vector[int] betti_numbers() - vector[int] persistent_betti_numbers(double from_value, double to_value) - vector[pair[double,double]] intervals_in_dimension(int dimension) - void write_output_diagram(string diagram_file_name) except + - vector[pair[vector[int], vector[int]]] persistence_pairs() - pair[vector[vector[int]], vector[vector[int]]] lower_star_generators() - pair[vector[vector[int]], vector[vector[int]]] flag_generators() + Simplex_tree_persistence_interface(Simplex_tree_interface_full_featured * st, bool persistence_dim_max) nogil + void compute_persistence(int homology_coeff_field, double min_persistence) nogil + vector[pair[int, pair[double, double]]] get_persistence() nogil + vector[int] betti_numbers() nogil + vector[int] persistent_betti_numbers(double from_value, double to_value) nogil + vector[pair[double,double]] intervals_in_dimension(int dimension) nogil + void write_output_diagram(string diagram_file_name) nogil except + + vector[pair[vector[int], vector[int]]] persistence_pairs() nogil + pair[vector[vector[int]], vector[vector[int]]] lower_star_generators() nogil + pair[vector[vector[int]], vector[vector[int]]] flag_generators() nogil |