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+/* This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+ * See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+ * Author(s): Vincent Rouvreau
+ *
+ * Copyright (C) 2016 Inria
+ *
+ * Modification(s):
+ * - YYYY/MM Author: Description of the modification
+ */
+
+#ifndef INCLUDE_PERSISTENT_COHOMOLOGY_INTERFACE_H_
+#define INCLUDE_PERSISTENT_COHOMOLOGY_INTERFACE_H_
+
+#include <gudhi/Persistent_cohomology.h>
+
+#include <vector>
+#include <utility> // for std::pair
+#include <algorithm> // for sort
+
+namespace Gudhi {
+
+template<class FilteredComplex>
+class Persistent_cohomology_interface : public
+persistent_cohomology::Persistent_cohomology<FilteredComplex, persistent_cohomology::Field_Zp> {
+ private:
+ /*
+ * Compare two intervals by dimension, then by length.
+ */
+ struct cmp_intervals_by_dim_then_length {
+ explicit cmp_intervals_by_dim_then_length(FilteredComplex * sc)
+ : sc_(sc) { }
+
+ template<typename Persistent_interval>
+ bool operator()(const Persistent_interval & p1, const Persistent_interval & p2) {
+ if (sc_->dimension(get < 0 > (p1)) == sc_->dimension(get < 0 > (p2)))
+ return (sc_->filtration(get < 1 > (p1)) - sc_->filtration(get < 0 > (p1))
+ > sc_->filtration(get < 1 > (p2)) - sc_->filtration(get < 0 > (p2)));
+ else
+ return (sc_->dimension(get < 0 > (p1)) > sc_->dimension(get < 0 > (p2)));
+ }
+ FilteredComplex* sc_;
+ };
+
+ public:
+ Persistent_cohomology_interface(FilteredComplex* stptr)
+ : persistent_cohomology::Persistent_cohomology<FilteredComplex, persistent_cohomology::Field_Zp>(*stptr),
+ stptr_(stptr) { }
+
+ Persistent_cohomology_interface(FilteredComplex* stptr, bool persistence_dim_max)
+ : persistent_cohomology::Persistent_cohomology<FilteredComplex,
+ persistent_cohomology::Field_Zp>(*stptr, persistence_dim_max),
+ stptr_(stptr) { }
+
+ std::vector<std::pair<int, std::pair<double, double>>> get_persistence(int homology_coeff_field,
+ double min_persistence) {
+ persistent_cohomology::Persistent_cohomology<FilteredComplex,
+ persistent_cohomology::Field_Zp>::init_coefficients(homology_coeff_field);
+ persistent_cohomology::Persistent_cohomology<FilteredComplex,
+ persistent_cohomology::Field_Zp>::compute_persistent_cohomology(min_persistence);
+
+ // Custom sort and output persistence
+ cmp_intervals_by_dim_then_length cmp(stptr_);
+ auto persistent_pairs = persistent_cohomology::Persistent_cohomology<FilteredComplex,
+ persistent_cohomology::Field_Zp>::get_persistent_pairs();
+ std::sort(std::begin(persistent_pairs), std::end(persistent_pairs), cmp);
+
+ std::vector<std::pair<int, std::pair<double, double>>> persistence;
+ for (auto pair : persistent_pairs) {
+ persistence.push_back(std::make_pair(stptr_->dimension(get<0>(pair)),
+ std::make_pair(stptr_->filtration(get<0>(pair)),
+ stptr_->filtration(get<1>(pair)))));
+ }
+ return persistence;
+ }
+
+ std::vector<std::pair<std::vector<int>, std::vector<int>>> persistence_pairs() {
+ auto pairs = persistent_cohomology::Persistent_cohomology<FilteredComplex,
+ persistent_cohomology::Field_Zp>::get_persistent_pairs();
+
+ std::vector<std::pair<std::vector<int>, std::vector<int>>> persistence_pairs;
+ persistence_pairs.reserve(pairs.size());
+ for (auto pair : pairs) {
+ std::vector<int> birth;
+ if (get<0>(pair) != stptr_->null_simplex()) {
+ for (auto vertex : stptr_->simplex_vertex_range(get<0>(pair))) {
+ birth.push_back(vertex);
+ }
+ }
+
+ std::vector<int> death;
+ if (get<1>(pair) != stptr_->null_simplex()) {
+ for (auto vertex : stptr_->simplex_vertex_range(get<1>(pair))) {
+ death.push_back(vertex);
+ }
+ }
+
+ persistence_pairs.push_back(std::make_pair(birth, death));
+ }
+ return persistence_pairs;
+ }
+
+ private:
+ // A copy
+ FilteredComplex* stptr_;
+};
+
+} // namespace Gudhi
+
+#endif // INCLUDE_PERSISTENT_COHOMOLOGY_INTERFACE_H_