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-rw-r--r--src/python/setup.py.in32
1 files changed, 26 insertions, 6 deletions
diff --git a/src/python/setup.py.in b/src/python/setup.py.in
index f993165c..b9f4e3f0 100644
--- a/src/python/setup.py.in
+++ b/src/python/setup.py.in
@@ -8,16 +8,18 @@
- YYYY/MM Author: Description of the modification
"""
-from setuptools import setup, Extension
+from setuptools import setup, Extension, find_packages
from Cython.Build import cythonize
from numpy import get_include as numpy_get_include
import sys
+import pybind11
__author__ = "Vincent Rouvreau"
__copyright__ = "Copyright (C) 2016 Inria"
__license__ = "MIT"
-modules = [@GUDHI_PYTHON_MODULES_TO_COMPILE@]
+cython_modules = [@GUDHI_CYTHON_MODULES@]
+pybind11_modules = [@GUDHI_PYBIND11_MODULES@]
source_dir='@CMAKE_CURRENT_SOURCE_DIR@/gudhi/'
extra_compile_args=[@GUDHI_PYTHON_EXTRA_COMPILE_ARGS@]
@@ -29,7 +31,7 @@ runtime_library_dirs=[@GUDHI_PYTHON_RUNTIME_LIBRARY_DIRS@]
# Create ext_modules list from module list
ext_modules = []
-for module in modules:
+for module in cython_modules:
ext_modules.append(Extension(
'gudhi.' + module,
sources = [source_dir + module + '.pyx',],
@@ -42,14 +44,32 @@ for module in modules:
runtime_library_dirs=runtime_library_dirs,
cython_directives = {'language_level': str(sys.version_info[0])},))
+ext_modules = cythonize(ext_modules)
+
+for module in pybind11_modules:
+ my_include_dirs = include_dirs + [pybind11.get_include(False), pybind11.get_include(True)]
+ if module == 'hera':
+ my_include_dirs = ['@HERA_WASSERSTEIN_INCLUDE_DIR@'] + my_include_dirs
+ ext_modules.append(Extension(
+ 'gudhi.' + module,
+ sources = [source_dir + module + '.cc'],
+ language = 'c++',
+ include_dirs = my_include_dirs,
+ extra_compile_args=extra_compile_args + [@GUDHI_PYBIND11_EXTRA_COMPILE_ARGS@],
+ extra_link_args=extra_link_args,
+ libraries=libraries,
+ library_dirs=library_dirs,
+ runtime_library_dirs=runtime_library_dirs,
+ ))
+
setup(
name = 'gudhi',
- packages=["gudhi","gudhi.representations"],
+ packages=find_packages(), # find_namespace_packages(include=["gudhi*"])
author='GUDHI Editorial Board',
author_email='gudhi-contact@lists.gforge.inria.fr',
version='@GUDHI_VERSION@',
url='http://gudhi.gforge.inria.fr/',
- ext_modules = cythonize(ext_modules),
+ ext_modules = ext_modules,
install_requires = ['cython','numpy >= 1.9',],
- setup_requires = ['numpy >= 1.9',],
+ setup_requires = ['numpy >= 1.9','pybind11',],
)