summaryrefslogtreecommitdiff
path: root/src/python/test/test_sklearn_cubical_persistence.py
diff options
context:
space:
mode:
Diffstat (limited to 'src/python/test/test_sklearn_cubical_persistence.py')
-rw-r--r--src/python/test/test_sklearn_cubical_persistence.py59
1 files changed, 59 insertions, 0 deletions
diff --git a/src/python/test/test_sklearn_cubical_persistence.py b/src/python/test/test_sklearn_cubical_persistence.py
new file mode 100644
index 00000000..1c05a215
--- /dev/null
+++ b/src/python/test/test_sklearn_cubical_persistence.py
@@ -0,0 +1,59 @@
+""" This file is part of the Gudhi Library - https://gudhi.inria.fr/ - which is released under MIT.
+ See file LICENSE or go to https://gudhi.inria.fr/licensing/ for full license details.
+ Author(s): Vincent Rouvreau
+
+ Copyright (C) 2021 Inria
+
+ Modification(s):
+ - YYYY/MM Author: Description of the modification
+"""
+
+from gudhi.sklearn.cubical_persistence import CubicalPersistence
+import numpy as np
+from sklearn import datasets
+
+CUBICAL_PERSISTENCE_H0_IMG0 = np.array([[0.0, 6.0], [0.0, 8.0], [0.0, np.inf]])
+
+
+def test_simple_constructor_from_top_cells():
+ cells = datasets.load_digits().images[0]
+ cp = CubicalPersistence(homology_dimensions=0)
+ np.testing.assert_array_equal(cp._CubicalPersistence__transform_only_this_dim(cells), CUBICAL_PERSISTENCE_H0_IMG0)
+ cp = CubicalPersistence(homology_dimensions=[0, 2])
+ diags = cp._CubicalPersistence__transform(cells)
+ assert len(diags) == 2
+ np.testing.assert_array_equal(diags[0], CUBICAL_PERSISTENCE_H0_IMG0)
+
+
+def test_simple_constructor_from_top_cells_list():
+ digits = datasets.load_digits().images[:10]
+ cp = CubicalPersistence(homology_dimensions=0, n_jobs=-2)
+
+ diags = cp.fit_transform(digits)
+ assert len(diags) == 10
+ np.testing.assert_array_equal(diags[0], CUBICAL_PERSISTENCE_H0_IMG0)
+
+ cp = CubicalPersistence(homology_dimensions=[0, 1], n_jobs=-1)
+ diagsH0H1 = cp.fit_transform(digits)
+ assert len(diagsH0H1) == 10
+ for idx in range(10):
+ np.testing.assert_array_equal(diags[idx], diagsH0H1[idx][0])
+
+def test_simple_constructor_from_flattened_cells():
+ cells = datasets.load_digits().images[0]
+ # Not squared (extended) flatten cells
+ flat_cells = np.hstack((cells, np.zeros((cells.shape[0], 2)))).flatten()
+
+ cp = CubicalPersistence(homology_dimensions=0, newshape=[-1, 8, 10])
+ diags = cp.fit_transform([flat_cells])
+
+ np.testing.assert_array_equal(diags[0], CUBICAL_PERSISTENCE_H0_IMG0)
+
+ # Not squared (extended) non-flatten cells
+ cells = np.hstack((cells, np.zeros((cells.shape[0], 2))))
+
+ # The aim of this second part of the test is to resize even if not mandatory
+ cp = CubicalPersistence(homology_dimensions=0, newshape=[-1, 8, 10])
+ diags = cp.fit_transform([cells])
+
+ np.testing.assert_array_equal(diags[0], CUBICAL_PERSISTENCE_H0_IMG0)