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Diffstat (limited to 'utilities/Persistence_representations/persistence_intervals/plot_persistence_Betti_numbers.cpp')
-rw-r--r-- | utilities/Persistence_representations/persistence_intervals/plot_persistence_Betti_numbers.cpp | 87 |
1 files changed, 0 insertions, 87 deletions
diff --git a/utilities/Persistence_representations/persistence_intervals/plot_persistence_Betti_numbers.cpp b/utilities/Persistence_representations/persistence_intervals/plot_persistence_Betti_numbers.cpp deleted file mode 100644 index 1cacbcd0..00000000 --- a/utilities/Persistence_representations/persistence_intervals/plot_persistence_Betti_numbers.cpp +++ /dev/null @@ -1,87 +0,0 @@ -/* This file is part of the Gudhi Library. The Gudhi library - * (Geometric Understanding in Higher Dimensions) is a generic C++ - * library for computational topology. - * - * Author(s): Pawel Dlotko - * - * Copyright (C) 2016 Inria - * - * This program is free software: you can redistribute it and/or modify - * it under the terms of the GNU General Public License as published by - * the Free Software Foundation, either version 3 of the License, or - * (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program. If not, see <http://www.gnu.org/licenses/>. - */ - -#include <gudhi/Persistence_intervals.h> - -#include <iostream> -#include <vector> -#include <limits> -#include <utility> - -using Persistence_intervals = Gudhi::Persistence_representations::Persistence_intervals; - -int main(int argc, char** argv) { - if ((argc != 3) && (argc != 2)) { - std::cout << "This program creates a gnuplot script of Betti numbers from a single persistence diagram file" - << "(*.pers).\n" - << "To run this program, please provide the name of a file with persistence diagram.\n" - << "The second optional parameter of a program is the dimension of the persistence that is to be used. " - << "If your file contains only birth-death pairs, you can skip this parameter.\n"; - return 1; - } - - unsigned dimension = std::numeric_limits<unsigned>::max(); - int dim = -1; - if (argc == 3) { - dim = atoi(argv[2]); - } - if (dim >= 0) { - dimension = (unsigned)dim; - } - - Persistence_intervals p(argv[1], dimension); - std::vector<std::pair<double, size_t> > pbns = p.compute_persistent_betti_numbers(); - - // set up the ranges so that we see the image well. - double xRangeBegin = pbns[0].first; - double xRangeEnd = pbns[pbns.size() - 1].first; - double yRangeBegin = 0; - double yRangeEnd = 0; - for (size_t i = 0; i != pbns.size(); ++i) { - if (pbns[i].second > yRangeEnd) yRangeEnd = pbns[i].second; - } - xRangeBegin -= (xRangeEnd - xRangeBegin) / 100.0; - xRangeEnd += (xRangeEnd - xRangeBegin) / 100.0; - yRangeEnd += yRangeEnd / 100; - - std::stringstream gnuplot_script; - gnuplot_script << argv[1] << "_GnuplotScript"; - std::ofstream out; - out.open(gnuplot_script.str().c_str()); - - out << "set xrange [" << xRangeBegin << " : " << xRangeEnd << "]" << std::endl; - out << "set yrange [" << yRangeBegin << " : " << yRangeEnd << "]" << std::endl; - out << "plot '-' using 1:2 notitle with lp " << std::endl; - double previous_y = 0; - for (size_t i = 0; i != pbns.size(); ++i) { - out << pbns[i].first << " " << previous_y << std::endl; - out << pbns[i].first << " " << pbns[i].second << std::endl; - previous_y = pbns[i].second; - } - out << std::endl; - out.close(); - - std::cout << "To visualize, install gnuplot and type the command: gnuplot -persist -e \"load \'" - << gnuplot_script.str().c_str() << "\'\"" << std::endl; - - return 0; -} |