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2023-01-20Merge tag 'tags/gudhi-release-3.7.1' into dfsg/latestdfsg/latestGard Spreemann
2022-11-09Remove spiral 2d as it can be fetch from python interfaceVincent Rouvreau
2022-01-14Merge tag 'tags/gudhi-release-3.5.0' into dfsg/latestGard Spreemann
2021-09-24review: remove also filtered_simplicial_complex/bunny_5000_complex.fscVincentRouvreau
2021-09-24bad urlVincentRouvreau
2021-09-22Remove bunnyVincentRouvreau
2020-08-11Merge tag 'tags/gudhi-release-3.3.0' into dfsg/latestGard Spreemann
2020-07-02Merge branch 'master' into edge_collapse_integration_vincentROUVREAU Vincent
2020-03-19better to test with tore3D_1307ROUVREAU Vincent
2020-03-19Same test for point cloud and distance matrix. Collapse distance matrix to ↵ROUVREAU Vincent
use the same args as rips_distance_matrix_persistence utility
2020-03-19utilities from off points and from distance matrixROUVREAU Vincent
2020-03-14Some introductory documentationMarc Glisse
2019-09-25Delete ambiguously, or DFSG-incompatibly, licensed data files.Gard Spreemann
2019-06-13Change CopyrightROUVREAU Vincent
2019-06-06Merge pull request #66 from VincentRouvreau/small_fixesVincent Rouvreau
Small fixes
2019-06-05Merge branch 'master' into kernelsROUVREAU Vincent
2019-06-05Fix #20: Add OFF section in file format and all documents target to it ↵ROUVREAU Vincent
instead of geomview.org documentation. Modify data/points/alphacomplexdoc.off in dimension 3 to be used as an example for OFF section in file format.
2019-02-12Add unitary test for inf value readvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cubical_complex_small_fix@4100 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5cdac452d9c79cf63c62ec1382de4140a719286f
2018-09-25merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3908 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ab0fe69130ba3cbb329e0e975053809180edba5d
2018-09-17Add benchmarkvrouvrea
Safe version for Alpha complex 3d (missing part if not weighted and not periodic) Need to fix Alpha_complex_3d_unit_test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3893 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 304c9f89826008eab67a72f3742caa8d6d80f36b
2018-09-14Use another point set. bunny is too big for unit testsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3891 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8348a146b372e6baf611101a0b0bc81caf6daa47
2018-09-13Add bunny_1000 for weighted periodic testvrouvrea
Modify copyright in consequence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3886 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2009e78132e2ca602436372e7f533a5b14a3b341
2018-08-13git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3778 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 189ac5572f69842e1d8d1cec68ca6a4f62e39bd4
2018-08-09Make human.off copyright clearervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3766 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d79fe7a1d0892476e70fd255a7cd0cef0d08823
2018-08-09Copyright clarification for human.off filevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3765 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3da155682259c8df1cabb587c8d60c79c75cdc9
2018-06-27merged trunkmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3644 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2be9ba6b6a381e677081a751e7d8f8c1d79385b0
2018-06-06Fix sphinx warning and issues due to new version of sphinxvrouvrea
Modify the doc for persistence diagram git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/python_2.1.0_fix_vincent@3543 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3efbc052bce9a11a6b4a758f8229e91eece2a7f4
2018-04-23added unitary tests for kernelsmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3391 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d383ed76f3cfd3724449cb7e8c24b895a7322d52
2018-04-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3327 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 85b28237989b93fb4b5f8629a7f28bdb51b9a1b1
2018-02-15integrated kernel code in pers_representation branchmcarrier
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3249 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 58e77263a0da3674e4699cef832b6d357dcf12e2
2018-02-13Fix Kl.off strange formatvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/offreaderfix_vincent@3244 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 1e297c5703ddd59e5b1af6c65a4fbe2a4c318c33
2018-02-02Merge last trunk modificatvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3212 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ea6296547b67ad82f5983d4309493e9131da7dd0
2018-01-08Merge of branch persistence_representation_integration_cmake_improvementvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3117 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 673143bd16e06d990aeb104a506cfd71f91a8717
2018-01-03git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/kernels@3110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 95fd5b9e4cd4738ecdeaeb27f20d267816b7bead
2017-12-22data files should not be executableglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3098 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 86e0117c9853753119cccde167a17dc7aa91f954
2017-12-20Merge 1_fold_cover_periodic_alpha_complexes branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 16709f47787220b4bb4a96936b211c932b03102d
2017-12-14Add cmake improvement for Persistence representation module.vrouvrea
Was bad tested and too hard to maintain git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_cmake_improvement@3071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa4684701edbe6d172e75f119afa912eb3b5dad7
2017-12-06Merge C++ version of persistence representationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_representation_integration_bis@3043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6421c7cbe670fad1a8900ccc0ea6ff32297dd5e7
2017-11-16Merge last trunk modificationsvrouvrea
Fix copyright issues Add Nerve_GIC as examples git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2897 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ee046c4c043c7fb76f4b2ad6772229f3a837ae8f
2017-11-09Merge last trunk modificationsvrouvrea
Comment some bad code Try to cythonize rips from correlation matrix git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2858 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b9bcdfdeae247ed5486e20cb62f2812fdd14b0d
2017-11-07git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2838 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: aa674c458f110c5c7cc3f5c987b921fcc96e3e7e
2017-10-23git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2801 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a1cfabdf6c0eb9cfbbcdc4445438bdcd0b83df8f
2017-10-10Fix tests and homogenize codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2775 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bdcc278981e2683a5b49f241f07704f3d5c7ca4e
2017-10-09git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2771 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cd87a5b72b67d27b21f765fac822ea69f9496019
2017-10-02Fix weighted periodic alpa complex 3d example testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2748 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ddf754a1f8046c7b17db89668cf8d4dd95f69dac
2017-10-02Fix weighted periodicvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2746 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf90bfffbc00efe5f391e45ac8ece6ff6e9d57ea
2017-10-02Fix weighted_alpha_complex_3d_persistence to work with CGAL 4.11 (2 cpp and ↵vrouvrea
cmake compiles the correct one) Homogeneize alpha_complex_3d* codes Fix weighted_periodic_alpha_complex_3d_persistence with CGAL doc help Add grid off file with weights to test weighted_periodic_alpha_complex_3d_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2744 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ecc4f3629e75bd986ffd22ec348f0412163e4dbd
2017-09-28Move correlation matrix in a dedicated foldervrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2726 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6ef596f87b67eaccc01a04a02083801081268d4e
2017-09-25Adding all that is needed for Rips complex construction from correlation ↵pdlotko
matrix. Moduo the fact that I cannot see the doc (althoug make doxygen do not create any errors), this is ready for review. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@2712 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e8e7acceaf2be6f17baa3d77c85e207a74a4fb33
2017-09-18git-svn-id: ↵mcarrier
svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Nerve_GIC@2683 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: cacaa8d543cb35bfd709092262809deb102230d5