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2020-10-05code review: promote SAFE modeROUVREAU Vincent
2020-09-30code review: emplace_back versus push_backROUVREAU Vincent
2020-09-29code review: inconsistency between code and commentROUVREAU Vincent
2020-09-16Some documentation about weighted dD Alpha complex. Make examples 3d/dD ↵ROUVREAU Vincent
consistents
2020-09-11Requires CGAL >= 5.1. Fix is_gabriel computationROUVREAU Vincent
2020-09-07Fix compilation error and test with 0. weightsROUVREAU Vincent
2020-09-04Merge branch 'master' of https://github.com/GUDHI/gudhi-devel into ↵ROUVREAU Vincent
weighted_alpha_complex_dD
2020-09-04Alpha_kernel_d, its tests and Alpha complex to use itROUVREAU Vincent
2020-08-21Fix compilation issues when cgal but no eigenROUVREAU Vincent
2020-03-22Merge master and fix conflictsROUVREAU Vincent
2020-03-05Remove travis and use appveyor for OSx. Fix parallel test by setting tests ↵ROUVREAU Vincent
dependencies
2020-01-27Code review: Use std::clog instead of std::coutROUVREAU Vincent
2019-11-16Merge branch 'master' into alpha_complex_with_cgal_epeck_dROUVREAU Vincent
2019-11-07Code review: replace streambufffer with streambuffer - was copied/ pasted ↵ROUVREAU Vincent
from several places
2019-11-05Use Epeck_d for examples. Add an Epick_d (fast version) example and test itROUVREAU Vincent
2019-11-04Use Point_3 instead of Bare_point_3 in non-weighted casesROUVREAU Vincent
2019-10-31Add a get_point method for Alpha_complex_3d. Change Point_3 type to be ↵ROUVREAU Vincent
either Weighted_point_3 or Bare_point_3 (new type). Add some get_point method tests.
2019-06-14Remove gudhi_patches for CGAL and CGAL 4.11.0 is now the minimal CGAL ↵ROUVREAU Vincent
version required. Modification of documentation accordingly
2018-11-23 // We could use Epick + CGAL::Tag_true for not weighted nor periodic, but ↵vrouvrea
during benchmark, we found a bug // https://github.com/CGAL/cgal/issues/3460 // This is the reason we only use Epick + CGAL::Tag_false, or Epeck // // FAST SAFE EXACT // Epick + CGAL::Tag_false Epeck Epeck git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@4012 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 88e844333b5bae8fcfd1104e493cdada1e4a4a3b
2018-11-21Code review : Use # error instead of static_assert(false, ...) for CGAL ↵vrouvrea
version detection Doc review : Better document CGAL types (FT, Weighted_point_3, Point_3, ...) Weighted alpha complex 3d example simplification git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@4009 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 187d7a08468c96192b3cb82c93a2df5b425290f9
2018-11-19Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@4003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94bbb0a5588ceee1ecf73d0503892e2f6c78274f
2018-11-17Simplify example.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/AC-glisse@3999 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ec94f4c900994fea36d76663a352bf9a5cf232c9
2018-11-16Doc review : User version bad description for Alpha complex 3dvrouvrea
Add a comment for alpha complex 3d example creation for templates Code review : SAFE is now the default version git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3990 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a283cc630ac78634d6700aefb981d130c9464024
2018-10-17Alpha complex 3d test was not checking CGAL is 4.11vrouvrea
Rewrite CMakeLists.txt to detect CGAL 4.11 for Alpha complex 3d git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3962 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7ccddf06201760ef4fddc4432a3b208b8b0213f7
2018-09-25clang-format all filesvrouvrea
Add safe version alpha complex 3d persistence utility git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3907 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 54b2d0de9231511864df9fa637b60b7ccf34f50f
2018-09-25Constants shall be upper casevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3906 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fcafbe39665a69c6645f8b9d73fc67b98709540e
2018-09-07Code review : rearrange documentation and examples according to making ↵vrouvrea
choices more orthogonal Rename Alpha_complex_3d_options.h Alpha_complex_options.h as it can be used by Alpha complex dD git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3875 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c5b105248e4766a44438a187bb130a3722b310f
2018-08-28Make fast/safe/exact, weighted/non-weighted, periodic/non-periodic more ↵vrouvrea
orthogonal choices Only examples work for the moment. Periodic to be tested. Add Alpha_complex_3d_from_points.cpp example. Maybe to be removed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3840 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f5621df603bdb149c52400a6095271ea0f54b84c
2018-07-31Fix documentation for CGAL version required by 3d versionvrouvrea
Remove duplicated example (cf. the one in the Simplex tree) Add the example for documentation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3713 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 204f77982c61bc30a6ad3218c82b98f8bb49d711
2018-07-31Add unitary tests and documentationvrouvrea
Fix debug exception mechanism git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3712 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 43f66f3843981ab9cd74c117c2b1c6bb9b94810b
2018-07-03Documentation for Alpha complex 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3664 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6d824cdab7ac5ea79ce458dac666d35a9a21ab7
2018-06-27Fix examples and utilitiesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3645 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 67ac8f8151a85988303c48c9453ee42fecb7a97a
2018-06-22Compiles run and tests for Alpha_3d, exact, weighted, periodic and weighted ↵vrouvrea
periodic git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3627 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e24d7de108d3e77eaf6319a8165a7c65bec57884
2018-06-22Use unique_ptr to store cgal alpha_shapes_3. Required for not objects_ to be ↵vrouvrea
freed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3626 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6dc9bbe25757a1a7bef2178ef63876c20d3a38b1
2018-06-19First create_complex versionvrouvrea
weighted periodic option git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3624 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d22e307b12aac1390593541f77cabcccffbc6ad
2018-06-18Add periodic 3d Alpha shapesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3622 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a97b603cf83c5f9a80404dd5786896e51015ee08
2018-06-15Weighted, normal and exact version of Alpha_shapes_3vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_3d_module_vincent@3618 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1b2014fe34b3e7814d9c3d02881c63e10f047b2
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2017-06-02Try to remove boost systemvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2504 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fd12c45af5ebeb72c4b49142abab91b46ce1a9da
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2017-04-18Rename CMake testsvrouvrea
Add specific GUDHI test coverage function Rename cmake/modules/GUDHI_*.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2362 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 071b1eda7d11b1781a9601a013b88a0b2a9b7bf7
2017-03-24Workaround for CGAL version 4.8 compilation issuevrouvrea
New target CGAL_WITH_EIGEN3_VERSION set with CGAL_VERSION when CGAL and Eigen3 found to ease CMakeLists.txt git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.8_issue@2241 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2fbf1f9397aa1549ba05aa26ac6852b882dce147
2016-10-20Merge last trunk modificationvrouvrea
Fix doc issue Still doc issue git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1739 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0a99345f06e93a3525691699a6fe1505979e8e8e
2016-09-23Fix cpplintsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1548 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b8d7d5b4bde8aeec92d6bfc79b8c146c551317c0
2016-09-22New template function create_complex for Alpha_complex to create the ↵vrouvrea
simplicial complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alpha_complex_create_complex@1540 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 24e53dc58d158166b976dd09760ad0e2acaf8e36
2016-08-04Make GUDHI Cmake less verbose on CGAL package findingvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1415 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2eebce43b0f75ab1cef3a2fe6f2c1bd0b38672a9
2016-07-01Eigen3 find_package factorizationvrouvrea
CGAL find package in root CMakeLists.txt for Witness complex git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/eigen3_cmake_factorization@1377 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 32137f7687837c63ecfab3a2d11114b27873a1f2
2016-07-01Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_cythonize@1375 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e09c451302009b8a4f8882bb286829b485c605ab
2016-06-14data points generator to follow convention namingvrouvrea
Alpha_complex instead of Alpha_shape git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1278 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 680d599dce4b87a570083ac16c6574166d7af47d
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