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2022-10-19persistence diagram default output is std::cout, not std::clog. Modify ↵Vincent Rouvreau
utilities help to be in agreement with this
2022-05-22Update src/Persistent_cohomology/example/rips_multifield_persistence.cppalbert-github
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2022-05-22Spelling correctionsalbert-github
A number of spelling corrections as reported by the codespell (see: https://github.com/codespell-project/codespell) program and lists. Some remarks: - not considered are grammatical errors - not considered are names in the code although there are a number that could be improved (like `childs` -> `children`) - in the documentation it could be made clearer what are variables and what is running text (e.g. by placing variables in running text between backticks) - some comments are in the French language, I think it would be better to have them in the English (United States version).
2021-09-22Remove bunnyVincentRouvreau
2021-07-01Move primality test to Field_Zp::initHind-M
Throw exception when not prime Add tests
2020-11-03Fix #415 by removing all install cmake targets from examplesROUVREAU Vincent
2020-09-08CMake > 3.5 to use Boost targets. Compile only what is available from boost ↵ROUVREAU Vincent
targets
2020-05-03Fix TBB Warning: tbb/task_scheduler_init.h is deprecated.ROUVREAU Vincent
2020-03-30Streamline initialize_filtrationMarc Glisse
2020-03-05Merge branch 'master' into print_warnings_to_stderrROUVREAU Vincent
2020-01-27Code review: Use std::clog instead of std::coutROUVREAU Vincent
2020-01-24Modern cmake for boost approachROUVREAU Vincent
2019-08-14Fix #35 Modify Copyright as GUDHI is not only a C++ libraryROUVREAU Vincent
2019-06-27Merge master modificationsROUVREAU Vincent
2019-06-14Remove gudhi_patches for CGAL and CGAL 4.11.0 is now the minimal CGAL ↵ROUVREAU Vincent
version required. Modification of documentation accordingly
2019-06-13Update src/Persistent_cohomology/example/plain_homology.cppVincent Rouvreau
Co-Authored-By: Marc Glisse <marc.glisse@inria.fr>
2019-06-13Change CopyrightROUVREAU Vincent
2019-06-13Modify plain_homology example to highlight persistence_dim_max parameterROUVREAU Vincent
2019-01-24Fix persistence_from_file example when the file is not conform.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@4075 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a1b15f6d0b02084babd70ce8001cd90b6c35c85
2018-08-07Fix issue #13 : [Global - utilities] use exit(-1) instead of std::abort in ↵vrouvrea
utilities git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3749 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3235f72cc618dcb6ab70b1826a4d3ce2608fa168
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2017-11-22Merge graph_expansion_blocker fix from cech_complex branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6397609dbf92cad0fdd6c0fc5365b96657edec9
2017-11-21Merge add_utils_in_gudhi_v2 branch in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2925 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7e7153337bed2b1641bb80c6c532d07f526f5b10
2017-11-16Add missing includescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2890 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ddda864abff7b9509984dcbc657225ea1c80b1a
2017-11-16Merge last trunk modificationsvrouvrea
Fix doxygen warnings git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2888 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b80b28a10495b6f2519b53885b1bf31be85ed7ac
2017-11-15Move 2 more examples into utilitiescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2883 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9fd71a4833c84640be2a0f792f1eaea5109874d
2017-11-07Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.11.fix@2839 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 22158e5d4aae2b6c0e5502c585cb6c513c08ac63
2017-11-06Add Alpha complex 3d fix for cgal 4.11vrouvrea
Add weighted_periodic_alpha_complex_3d_persistence example git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cgal_4.11.fix@2837 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 07d016f7879220064b53ccfe19b169f06e79c86f
2017-11-06Rollback commented linesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2831 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 052a8f264877e7ffa87f8c81abf0f0c83cb60d54
2017-10-26Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2811 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a37c02ca51d0df28a981207db6ecc1bd0991ffa
2017-10-10Fix tests and homogenize codevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2775 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bdcc278981e2683a5b49f241f07704f3d5c7ca4e
2017-10-10Fix CGAL 4.11 bug and remove old_interface file. Better done with #ifvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2774 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a905b04cfa2718f9d5abc80e14ab1ee26d16279
2017-10-02Fix weighted periodic alpa complex 3d example testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2748 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ddf754a1f8046c7b17db89668cf8d4dd95f69dac
2017-10-02remove test_cgalvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2747 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9b036eb3ccef79e012eacb045a0dda37db1de994
2017-10-02Fix weighted periodicvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2746 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bf90bfffbc00efe5f391e45ac8ece6ff6e9d57ea
2017-10-02Fix weighted_alpha_complex_3d_persistence to work with CGAL 4.11 (2 cpp and ↵vrouvrea
cmake compiles the correct one) Homogeneize alpha_complex_3d* codes Fix weighted_periodic_alpha_complex_3d_persistence with CGAL doc help Add grid off file with weights to test weighted_periodic_alpha_complex_3d_persistence git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2744 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ecc4f3629e75bd986ffd22ec348f0412163e4dbd
2017-09-29Merge from trunkcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2732 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7872aa224ee471c05e9213b81192d304254e608a
2017-09-27Merge last trunk modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2720 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 37cec1ea1e06c9e9656962614fcddc0fa022c5d0
2017-09-26adding a version of periodic weighted alpha shape (that unfortunatelly do ↵pdlotko
not work yet...) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2718 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 611967b7fc8257fb2ae27ecc42f0e303c183755a
2017-09-26Merge weighted alpha complex fix branchvrouvrea
Add some text to 3d alpha complexes in the usage function git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2716 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6f2ee1897438a6bf75b484c2c625c43f2571ab41
2017-09-25Fix weighted alpha complex 3dvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/weighted_alpha_complex_fix@2709 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3e7d1f73038d193b566e790a3095b6f802c48b48
2017-09-22Remove global filtration attribute of te simplex tree (including getter and ↵vrouvrea
setter) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2705 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6c179ae47e61d1ca12d1f54c4ae1fc0e3c1fde2
2017-09-20Merge modifications for simplex_tree automatic dimension setvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2689 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c6316d51f476a795b59c8b870db1aaf0b4591
2017-07-04Add Gudhi namespace for reader_utilsvrouvrea
Add confidence band in persistence_graphical_tools.py Persistence_diagram returns a plot that is no more showed. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/persistence_diagram_improvement@2582 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4125f4f525057e89c8b0d5d164ea0b9d1df1bd72
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-06-01Split and fix README filecjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2496 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0eecb1e37fd208522de15369ac8cf4c960c214c5
2017-05-31Convert more examples into utilitiescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2494 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 54fa703f0489cba059a8df973738118f6a092f70
2017-05-30Make install examples mechanismvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_modules_for_gudhi@2467 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 018b6e55c392b37d02503e7822e0a586061c987d
2017-05-09Doc issuevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2407 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59aa4cbeef583b93f5e0e4416a4cd2903643d8f0