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2020-11-03Fix #415 by removing all install cmake targets from examplesROUVREAU Vincent
2020-09-08CMake > 3.5 to use Boost targets. Compile only what is available from boost ↵ROUVREAU Vincent
targets
2020-05-11More DOI in the biblioMarc Glisse
and update references from a preprint to the published version
2020-05-03Fix TBB Warning: tbb/task_scheduler_init.h is deprecated.ROUVREAU Vincent
2020-04-23Merge remote-tracking branch 'origin/master' into compute_persistenceMarc Glisse
2020-04-05Proper exception in write_output_diagramMarc Glisse
2020-03-30Streamline initialize_filtrationMarc Glisse
2020-03-22Merge master and fix conflictsROUVREAU Vincent
2020-03-17Remove thread_local workaroundROUVREAU Vincent
2020-03-17Fix #224ROUVREAU Vincent
2020-03-05Merge branch 'master' into print_warnings_to_stderrROUVREAU Vincent
2020-02-11Code review: roll back to cout for output utilitiesROUVREAU Vincent
2020-01-27Code review: Use std::clog instead of std::coutROUVREAU Vincent
2020-01-24Modern cmake for boost approachROUVREAU Vincent
2019-12-06Modify boost tests to be more verbose and errors in colour. I kept coverage ↵ROUVREAU Vincent
tests (was only used by Jenkins) and they still can be activated through an option
2019-11-09Empty complexes have 0 (not -1) Betti numbersMarc Glisse
2019-08-14Fix #35 Modify Copyright as GUDHI is not only a C++ libraryROUVREAU Vincent
2019-06-27Merge master modificationsROUVREAU Vincent
2019-06-14Remove gudhi_patches for CGAL and CGAL 4.11.0 is now the minimal CGAL ↵ROUVREAU Vincent
version required. Modification of documentation accordingly
2019-06-13Update src/Persistent_cohomology/example/plain_homology.cppVincent Rouvreau
Co-Authored-By: Marc Glisse <marc.glisse@inria.fr>
2019-06-13Change CopyrightROUVREAU Vincent
2019-06-13Modify plain_homology example to highlight persistence_dim_max parameterROUVREAU Vincent
2019-06-12RephraseROUVREAU Vincent
2019-06-12Fix alpha complex 3d utilities and add links to utils pagesROUVREAU Vincent
2019-06-12Only one constructor to clarify documentation about persistence_dim_max ↵ROUVREAU Vincent
parameter
2019-06-06Fix doc reviewROUVREAU Vincent
2019-06-04Fix #7 : document better get_persistence_pairs (C++) and persistence_pairs ↵ROUVREAU Vincent
(Python) methods
2019-06-04Fix #9 : rename Complex_ds as FilteredComplex. Set private types of ↵ROUVREAU Vincent
non-exposed types
2019-01-24Fix persistence_from_file example when the file is not conform.vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@4075 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9a1b15f6d0b02084babd70ce8001cd90b6c35c85
2018-08-09GUDHI_CAN_USE_CXX11_THREAD_LOCAL was missing in ↵vrouvrea
Persistent_cohomology::annotation_of_the_boundary git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3764 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7d53de701470203e48f76896e2859d1df670564c
2018-08-07Fix issue #13 : [Global - utilities] use exit(-1) instead of std::abort in ↵vrouvrea
utilities git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3749 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3235f72cc618dcb6ab70b1826a4d3ce2608fa168
2018-05-22Merge cmake_v3_vincent branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3449 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 42f89daaccbee17bdb44894b1cef781bba64e5df
2018-05-18Try once more to clarify what 'keys' do in the FilteredComplex concept.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3447 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 59ba4649eb53b4da2b24e4a147196c2a93641aec
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-04-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3335 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 41b78dbadb13e3eca889479c1112814b2b58f679
2018-04-03Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3327 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 85b28237989b93fb4b5f8629a7f28bdb51b9a1b1
2018-03-13Simplex_key clarifications in FilteredComplex concept.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3284 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a42ef2c14a64a769c9a8c8ddc37071ba260b17bf
2018-02-02Fix readme and doc issue after mergevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3213 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4fd050a6f686044aa6f6dcc290025e321e0dba1b
2018-02-02Merge last trunk modificatvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_from_correlation_matrix@3212 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ea6296547b67ad82f5983d4309493e9131da7dd0
2018-02-01Merge from trunk.glisse
hand-merge README that moved to *.md. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3201 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f1922a265c79937e507bbb963875d21fae88069e
2018-01-26Move documentation Copyright in footervrouvrea
Removed from each module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3167 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7595f2d18cdc3773bbd96fa9fed414876ff9fdc7
2018-01-26Bug in Persistent_cohomology: it computes H_1 for a 1-complex, while it does ↵glisse
not compute H_2 for a 2-complex. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-glisse@3163 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0c027aa0c8f14e563ba1e707419b9dee1b84a610
2017-12-21Code review fix : Bad cmake utility name, file read check, non negative ↵vrouvrea
weight check git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3095 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 09c0342e7c06f69b62f01c3ba8330a99b963399c
2017-12-20Merge 1_fold_cover_periodic_alpha_complexes branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3093 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 16709f47787220b4bb4a96936b211c932b03102d
2017-11-22Merge graph_expansion_blocker fix from cech_complex branchvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2932 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c6397609dbf92cad0fdd6c0fc5365b96657edec9
2017-11-21Merge add_utils_in_gudhi_v2 branch in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2925 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7e7153337bed2b1641bb80c6c532d07f526f5b10
2017-11-16Add missing includescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2890 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 9ddda864abff7b9509984dcbc657225ea1c80b1a
2017-11-16Merge last trunk modificationsvrouvrea
Fix doxygen warnings git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2888 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b80b28a10495b6f2519b53885b1bf31be85ed7ac
2017-11-15Move 2 more examples into utilitiescjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_utils_in_gudhi_v2@2883 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b9fd71a4833c84640be2a0f792f1eaea5109874d
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