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2022-10-19persistence diagram default output is std::cout, not std::clog. Modify ↵Vincent Rouvreau
utilities help to be in agreement with this
2022-06-03Merge pull request #624 from albert-github/feature/bug_spellVincent Rouvreau
Spelling corrections
2022-05-23Documentation: handling references to examples in a more transparent wayalbert-github
Adding the other examples also with `gudhi_example_link`.
2022-05-22Spelling correctionsalbert-github
A number of spelling corrections as reported by the codespell (see: https://github.com/codespell-project/codespell) program and lists. Some remarks: - not considered are grammatical errors - not considered are names in the code although there are a number that could be improved (like `childs` -> `children`) - in the documentation it could be made clearer what are variables and what is running text (e.g. by placing variables in running text between backticks) - some comments are in the French language, I think it would be better to have them in the English (United States version).
2021-04-27Doxygen documentation improvementROUVREAU Vincent
2021-04-22Fix return type of source/targetMarc Glisse
2021-04-20Vertex_handle -> size_tMarc Glisse
2021-04-20Targeted include, more constMarc Glisse
2021-04-17Safely drop some vertices in sparse RipsMarc Glisse
2021-04-17Introduce a custom graph typeMarc Glisse
2021-04-17Sparse Rips: disable `mini`, optimize a bit redundant pointsMarc Glisse
2020-11-09Merge remote-tracking branch 'origin/master' into fardistMarc Glisse
and remove example installation
2020-11-03Fix #415 by removing all install cmake targets from examplesROUVREAU Vincent
2020-10-31s/kernel/distance/ for choose_n_farthest_points argumentMarc Glisse
2020-09-08Remove boost::systemROUVREAU Vincent
2020-09-08CMake > 3.5 to use Boost targets. Compile only what is available from boost ↵ROUVREAU Vincent
targets
2020-03-30Streamline initialize_filtrationMarc Glisse
2020-03-22Merge master and fix conflictsROUVREAU Vincent
2020-03-05Merge branch 'master' into print_warnings_to_stderrROUVREAU Vincent
2020-03-05Remove travis and use appveyor for OSx. Fix parallel test by setting tests ↵ROUVREAU Vincent
dependencies
2020-01-27Code review: Use std::clog instead of std::coutROUVREAU Vincent
2020-01-24Modern cmake for boost approachROUVREAU Vincent
2019-12-06Modify boost tests to be more verbose and errors in colour. I kept coverage ↵ROUVREAU Vincent
tests (was only used by Jenkins) and they still can be activated through an option
2019-11-07Code review: replace streambufffer with streambuffer - was copied/ pasted ↵ROUVREAU Vincent
from several places
2019-10-10Add maximal edge length parameter for sparse rips persistence utilityROUVREAU Vincent
2019-08-14Fix #35 Modify Copyright as GUDHI is not only a C++ libraryROUVREAU Vincent
2019-06-13Change CopyrightROUVREAU Vincent
2019-05-10Fix blocker formulaMarc Glisse
I had copied it straight from the paper, without adding the factor 2 we have everywhere.
2019-05-10max_dim=INT_MAX for sparse Rips by default.Marc Glisse
2019-04-18Doc reformat.Marc Glisse
2019-04-16Add min and max filtration values for the sparse RipsMarc Glisse
2019-04-13Fix the documentation of what relation i and j satisfy in the lower ↵Marc Glisse
triangular part of a matrix.
2019-04-13Handle triangular matrixMarc Glisse
2019-04-11commentsMarc Glisse
2019-03-19FixesMarc Glisse
2019-03-19Filter during expansion. Completely untested.Marc Glisse
2019-03-19Start fixing the sparse rips to match the true definition (not a clique complex)Marc Glisse
2019-01-17adjacency lists can be directed, undirected or bidirectional for Simplex ↵vrouvrea
tree insert_graph method Use of directed adjacency lists to fasten computation and use less memory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/adjacency_list_direction_improvement@4061 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 839fabc15398ce590d09806bd783cd656029f3c1
2018-10-24True interleaving distance for the sparse Rips.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3964 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6c342750c0ea2e7d48e8c3fc9cc2a4d04f8b379b
2018-10-17Merge branch sparserips-pythonvrouvrea
Fix doxygen bad link on sparsify point set function Fix some lines too long git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94946e2dd7853bd65d6790546ad2ef8a35d298c1
2018-10-06merge from trunkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3935 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 81f81cb6b39ece77718c8b03d408a90789946c0f
2018-10-02More doc changes for python sparse ripsglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3921 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: f9a33e3c4a6fc6d68a81b753a88ff9d39bdcfb9f
2018-08-07Fix issue #13 : [Global - utilities] use exit(-1) instead of std::abort in ↵vrouvrea
utilities git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ninja_cmake_warning_fix_vincent@3749 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3235f72cc618dcb6ab70b1826a4d3ce2608fa168
2018-07-20First try at interfacing the sparse rips in python. Needs at least ↵glisse
documentation and tests. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3697 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 75bef59e90355853ee24807ca7453c4bb0a38f43
2018-06-13Fix cpplintvrouvrea
Merge branch persistence_representation_bug_fix_vincent rev. 3600 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3603 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 7e9364e5294b3433eddcebf273924193da3b0742
2018-06-13Fix cppcheck issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3601 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 44cc04b1609d3b3d40382fd02d4fe15e5ba0159f
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2018-04-26Fix Copyrightsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/copyright_clarification_vincent@3400 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff348beedf92656c6913c2a1df983b5804b33988
2018-04-04No need to repeat title, automatically done by the websitevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3338 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 51d295377d2b3235e9316f199bf95d3c5aeaeab3
2018-04-04Merge sparse rips branch in trunkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3336 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 01dcab006197637ccba9c29f8990375fe05ad7b4
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