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2020-03-22Merge master and fix conflictsROUVREAU Vincent
2020-03-17Merge pull request #242 from mglisse/genripsMarc Glisse
Generators for Simplex_tree
2020-03-06Generators for simplex treeMarc Glisse
2020-03-05CR: use complex_simplex_range instead of filtration_simplex_rangeROUVREAU Vincent
2020-03-05Add some tests and documentation for NaN management in ↵ROUVREAU Vincent
make_filtration_non_decreasing Simplex tree method
2020-01-27Code review: Use std::clog instead of std::coutROUVREAU Vincent
2019-12-06Modify boost tests to be more verbose and errors in colour. I kept coverage ↵ROUVREAU Vincent
tests (was only used by Jenkins) and they still can be activated through an option
2019-08-14Fix #35 Modify Copyright as GUDHI is not only a C++ libraryROUVREAU Vincent
2019-02-14Fix of duplicated vertices in list.vrouvrea
Modify dimension computation. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_insert_duplicated_vertices_fix_vincent@4107 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e6ac9ee4c9d34e59c07d9f5b16b13b5151608009
2019-01-18Add setS test for adjacency_list verticesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/adjacency_list_direction_improvement@4066 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 78e72b061f0e863617641384d7cca9291e107aac
2019-01-17adjacency lists can be directed, undirected or bidirectional for Simplex ↵vrouvrea
tree insert_graph method Use of directed adjacency lists to fasten computation and use less memory git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/adjacency_list_direction_improvement@4061 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 839fabc15398ce590d09806bd783cd656029f3c1
2018-10-02Code review : Factorize copy_from and move_from for copy/move assignment/ctorvrouvrea
Make rec_copy private Factorize root members recursive deletion In move, test that (map_el.second.children() != &(complex_source.root_)) instead of (map_el.second.children()->oncles == &(complex_source.root_)) => more efficient Support self copy assignment detection No more use of std::swap in move assignment git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3924 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3aa3727294e54b4ffbc48c3cdb901facf3cd59d7
2018-09-03Code review : Fix remarks for move and copy assignmentvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3868 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 069e920ab3ca9504b5e1c49ab23afe1693f4e6f8
2018-08-24Fix move constructor and assignment for the Simplex treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3831 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ff520472b6a1b9f00d0688fbe7dc467af50e16fe
2018-08-21Move assignment and its associated testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3819 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6fd6793b177e0a6b803adf5a710f63d8647a9288
2018-08-21Add DEBUG_TRACES for the testvrouvrea
Add move constructor test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3818 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4e9baaedcbcb6fdfc7b5ee0ac42bc75559b67bd1
2018-08-21Bad copy assignment testvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3815 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c5c9cd3c0553b3367452489e7fd5e874f5093742
2018-08-21Copy assignment for Simplex_tree and its tests (rules of 5)vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/simplex_tree_fix_vincent@3814 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 4ac0e87aaef3bf29369f25b8eb0c766a6f1b395b
2018-05-15CMake minimal version is now 3.1vrouvrea
Compilation flags are now externalized in cmake/modules Add NO_POLICY_SCOPE for GUDHI_third_parties to fix warnings Try to fix CGAL 4.12 that is no more setting CGAL_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cmake_v3_vincent@3445 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0ac7613f016e28cc634606f76e85ecaf5bacb2d4
2017-12-17Fix graph insertion.glisse
It currently ignores edge (i, j) with j<i, but nothing in the concept forbids such an edge. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/misc-glisse@3080 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 305f58b4995878da23b0fa07dc783c0bdceab6db
2017-10-26Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2811 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2a37c02ca51d0df28a981207db6ecc1bd0991ffa
2017-10-26Code review: downgrade_dimension renamed lower_upper_bound_dimension and ↵vrouvrea
make it private. Automatically when dimension_to_be_lowered_ is set (on removal) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2810 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c764433bcc5357acc6454683d4f4182c7c960d6d
2017-10-20Code review : rename automatic_dimension_set with downgrade_dimensionvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2796 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3b094bc579367d40790c3791f2c4a3700a3d93ae
2017-10-05Merge the branch graph_expansion_with_blocker_oracle for the Simplex_treevrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@2759 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fa4cf79042f8e9b162617a5a571e06a3feb4c191
2017-09-22Remove global filtration attribute of te simplex tree (including getter and ↵vrouvrea
setter) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_remove_useless_global_filtration@2705 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a6c179ae47e61d1ca12d1f54c4ae1fc0e3c1fde2
2017-09-22Remove automatic_dimension_set call from remove and prune functionsvrouvrea
Make it public to be available Modify tests accordingly git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2703 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 2ff42d5327ae76b121390a913c4e548d6f59ea99
2017-09-20Roll back simplex tree set_filtration modification (assign_filtration ↵vrouvrea
asserts in debug) and modify test git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2694 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d08cc4b4f310784975b81d10b7ebd78063c42378
2017-09-20Separate and improve simplex tree iostream operators to test automatic ↵vrouvrea
dimension set on iostream operators git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2693 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: dafd077f3ed20eafaccdb27d56e02b3d9e5c44a7
2017-09-20Add tests limitsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2690 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fc3e0cb28170f49a598d50fc7e32ac2d9d191447
2017-09-20Merge modifications for simplex_tree automatic dimension setvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/ST_automatic_dimension_set@2689 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c18c6316d51f476a795b59c8b870db1aaf0b4591
2017-07-06Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2588 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 551995fb34cfdc3c170ae5cfdaf2b249dcb03f8f
2017-07-05Checkin tests and fixesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/graph_expansion_with_blocker_oracle@2586 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0f9cbe3d6b94e939e151dea989ae99f7e4f3bffa
2017-06-02Get rid of Boost_system library linkvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_system_no_deprecated_test@2509 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 52deba0f2212767b99b801810d356e55417225db
2017-04-19Rename tests and examples to be consistent with the naming rulesvrouvrea
xml test results is now generated out of source git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/add_test_windows@2364 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ae2dd1592b63f4e7da5e17655761697b6daf7dd0
2016-09-30Fix compilation issuesvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/rips_complex_module@1596 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 343308ef914e6a6617890f49a55eb0bb8db15ee9
2016-09-15Fix cpplint and warningsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/warning_fix@1502 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: afc7d137b66225954ebfe37a823f1f0b6bcfe7a5
2016-06-10Rename namespaces according to conventioncjamin
+ Missing Boost_THREAD_LIBRARY + Useless typename + Use TBB_LIBRARIES git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1274 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 5c02ec481b62ef52b40d849e76e3d333e2ca4e7c
2016-06-10Use TBB_LIBRARIES instead of TBB_RELEASE_LIBRARY + missing boost dependencycjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@1269 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: d39ecf562678c53f960467e7cb14eeaff4b938c4
2016-06-07Rename projects in CMakeLists.txtcjamin
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/fix_naming@1257 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a51e43d795b0c246d0949c7566aa57d3e15925c7
2016-04-08Merge of alpha complex feature from trunkvrouvrea
Add Eigen3 in installation Add alpha complex in introduction All examples directory moved to example (was example/common, example/Alpha_complex) git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1110 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0b88a4f2b102e2189f4b916b8358ffb2458a72f0
2016-03-31Fix TBB issue in CMakevrouvrea
Add TBB in Doxygen git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Doxygen_for_GUDHI_1.3.0@1086 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e3d3251431193d21ebf9344c230d12df624cd905
2016-03-23prune_above_filtration returns filtration vector modification information ↵vrouvrea
instead of calling initialize_filtration() git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1071 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6fdc1797ac6e7b452abe150643f0ec9578c3bbab
2016-03-14Remove Options::store_filtration check is true in prune_above_filtration ↵vrouvrea
function in order to let the user empty the tree To empty the tree, call initialize_filtration() and prune_above_filtration(-1) Add a UT to test this case git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1044 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: bb4a916fb547c6312f2138d355903ef87525e9c4
2016-03-14No more use of threshold_ for prune_above_filtration because threshold may ↵vrouvrea
be not up to date git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1043 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b17d8ef63bc173b4c4b6b0bde31f97d85672a754
2016-02-19Merge last trunk modificationsvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@1032 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 0e5b89e0ea0d69ebfdb74ba3bbf29518f7ce5ce8
2016-02-04CMake strategy modificationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@1003 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: c917934525e020b54b2f4506b5c9d060a28c9d89
2016-01-19rollbackvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@978 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6aeb45f999861185cda0d0961f22b4a08b413927
2016-01-19Try different values for xUnitvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/Win64_Boost_Xunit_fix@977 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: b3e39a4858a4be139236be0a87619164a35ea7c0
2016-01-19make_filtration_non_decreasing fixvrouvrea
Ut rewrite git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@974 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3326338b9454923b59d3e42add0f3530c6dbe16f
2016-01-15make_filtration_non_decreasing fix.vrouvrea
Make it non decreasing for border and not only for parent. git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/alphashapes@972 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: e71f40baa56de53e68b02603b64fb504b1f5d978
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