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2019-07-01Code review: it is better to keep GPL for modules depending on CGALROUVREAU Vincent
2019-06-27Malformed tableROUVREAU Vincent
2019-06-26Format Python files with blackROUVREAU Vincent
2019-06-26Change Python template and fix copyrightsROUVREAU Vincent
2019-06-19CGAL 4.11 as minimal versionROUVREAU Vincent
2019-06-14Fix CGAL version in example installation sectionROUVREAU Vincent
2019-06-14Remove gudhi_patches for CGAL and CGAL 4.11.0 is now the minimal CGAL ↵ROUVREAU Vincent
version required. Modification of documentation accordingly
2019-06-13Merge master branchROUVREAU Vincent
2019-06-13Change CopyrightROUVREAU Vincent
2019-06-13Merge pull request #69 from VincentRouvreau/bottleneck_documentationVincent Rouvreau
Bottleneck documentation
2019-06-12Merge branch 'master' into persistence_intervals_numpy_arrays_vincentROUVREAU Vincent
2019-06-07Fix doc review. Add citations for python doc version. Replace (13,0) with ↵ROUVREAU Vincent
(0,13) in figure
2019-06-06Fix sphinx testROUVREAU Vincent
2019-06-06Fix #11 - Distance computation shall be better documented.ROUVREAU Vincent
2019-06-06Merge pull request #66 from VincentRouvreau/small_fixesVincent Rouvreau
Small fixes
2019-06-05Add some debug tracesROUVREAU Vincent
2019-06-05Fix #20: Add OFF section in file format and all documents target to it ↵ROUVREAU Vincent
instead of geomview.org documentation. Modify data/points/alphacomplexdoc.off in dimension 3 to be used as an example for OFF section in file format.
2019-06-04Fix #7 : document better get_persistence_pairs (C++) and persistence_pairs ↵ROUVREAU Vincent
(Python) methods
2019-06-03Fix #55ROUVREAU Vincent
2019-06-03Fix #46ROUVREAU Vincent
2019-06-03modify cells height for C++ doc. Use bullet lists to have the same font ↵ROUVREAU Vincent
height on main page
2019-05-29Rename nerve_gic_complex_sum.rst as nerve_gic_complex_sum.inc and use ↵ROUVREAU Vincent
introduction sections
2019-05-29Reformat modules summary and occupy 100% of the pageROUVREAU Vincent
2019-05-27Merge pull request #54 from mglisse/witness-docVincent Rouvreau
Clarify doc of witness complex
2019-05-27long linesMarc Glisse
2019-05-21Use numpy to speed computations for plot_persistence_density and fix code reviewROUVREAU Vincent
2019-05-10Clarify doc of witness complexMarc Glisse
2019-04-26numpy is now a hard dependency. persistence_intervals_in_dimension and ↵ROUVREAU Vincent
read_persistence_intervals_in_dimension now returns a numpy array of dimension 2 (list of [birth, death]).
2019-04-18Merge remote-tracking branch 'origin/master' into sparsev3Marc Glisse
2019-04-16Add min and max filtration values for the sparse RipsMarc Glisse
2019-03-15Improve python installation documentationROUVREAU Vincent
2019-03-15Fix code reviewROUVREAU Vincent
2019-03-14Fix code reviewROUVREAU Vincent
2019-03-13Improve documentation for Tangential complex (Fix #16)ROUVREAU Vincent
2019-03-12Add some documentation for Fix #31ROUVREAU Vincent
Cythonization of Fix #31 Add some tests
2019-02-14Fix https://gitlab.inria.fr/GUDHI/gudhi-devel/issues/28vrouvrea
[python - install] make install does not install properly Use 'python setup.py install' command instead of copying files git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@4108 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 652d3597897aa3e7d1df97083cc3e2e4ae14f090
2019-02-14Fix https://gitlab.inria.fr/GUDHI/gudhi-devel/issues/25 [python] A Cmake ↵vrouvrea
option to set/unset runtime_library_dirs cmake -DWITH_GUDHI_CYTHON_RUNTIME_LIBRARY_DIRS=OFF .. # to disable runtime_library_dirs set in setup.py cf. Debian disallows setting rpath, so I'm currently unsetting runtime_library_dirs for the Python extensions. Could this perhaps be made into a CMake option? https://git.nonempty.org/debian-gudhi/tree/debian/patches/0005-Don-t-set-runtime-library-dirs-for-Python-extensions.patch?h=debian/sid&id=fed62e52ab396f0d6ba9029f12d5ef35d7761989 git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@4105 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 75f19373b2f01c2757bf1b11c81beff64021ddd8
2019-02-12Fix doc for C++ and Python.vrouvrea
Fix some warnings on Nerve GIC sphinx doc generation git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/cubical_complex_small_fix@4101 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 57eacb8c4108be212e61796c65e3b45bb9c13644
2018-12-17Merge tangential-miro branchvrouvrea
Add reference to cubical in persistence module git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@4038 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 832343cd6e2357c9e229d5b34f6de03e50d2da67
2018-10-31Make dependency with boost 1.56 instead of 1.48vrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/boost_1.56_vincent@3967 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: a5941b8c4f65ec8e6f62117aceb5f22e0142f255
2018-10-18Add persistence_dim_max argument in simplex tree persistence documentationvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3963 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: ef8f3b0c2b0e3cdbda73687f1e65877213918830
2018-10-17Merge branch sparserips-pythonvrouvrea
Fix doxygen bad link on sparsify point set function Fix some lines too long git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/trunk@3961 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 94946e2dd7853bd65d6790546ad2ef8a35d298c1
2018-10-17Some indentation fixvrouvrea
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3960 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6dce53b98bc0b299a3621602f385b3b44e16d489
2018-10-10Make RipsComplex a clickable linkglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3942 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 642ae449f85cf8516fc632716ea14b22f74ec517
2018-10-10add myself as coauthorglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3941 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 61cf8acdce3bc5cb0c8261166e195eccc3f8bb54
2018-10-10add example to the list of examplesglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3940 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: fe3c41785e3bb72766f7a817851583f82b9f7d15
2018-10-10epsilon + code blockglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3939 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6a88d96a67d9d02f95e63fd627c295abebb49ce8
2018-10-10Use math instead of unicode for epsilonglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3938 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 8cccce774b7406d90a55d0e2827fad6dc3855b39
2018-10-10Example text and copyright yearglisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3937 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 6d5bf6a2c55f7c4fd4f3f5159651b3ffa057ffdd
2018-10-06Doc tweaks.glisse
git-svn-id: svn+ssh://scm.gforge.inria.fr/svnroot/gudhi/branches/sparserips-python@3936 636b058d-ea47-450e-bf9e-a15bfbe3eedb Former-commit-id: 3c75c674876bcb38d0a87de41d406832baf61b55