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AgeCommit message (Collapse)Author
2020-12-10Fix memory leakROUVREAU Vincent
2020-11-18merge master and resolve conflictsROUVREAU Vincent
2020-11-13Merge pull request #405 from mglisse/botnegMarc Glisse
Bottleneck distance for one point or negative coordinates
2020-11-13Test with negative coordinatesMarc Glisse
2020-11-10Revert change to the exampleMarc Glisse
It would require updating the figure.
2020-11-08Test BettiCurve with infinite valueMarc Glisse
+ black reformatting
2020-11-07Swap clip with int conversionMarc Glisse
This allows correct handling of infinite values.
2020-11-05More numpy in BettiCurveMarc Glisse
suggested by @raphaeltinarrage
2020-11-04import matplotlib only when necessary in examples, in function of args. ↵ROUVREAU Vincent
Tests are without matplotlib, so no need to test if present
2020-11-03Add comment in code for get_boundaries if not interested in filtration valuesROUVREAU Vincent
2020-11-02Merge master and resolve conflictsROUVREAU Vincent
2020-10-22Document the changeMarc Glisse
It would be possible to emit the duplicate points instead of stopping, but the current implementation makes that inconvenient.
2020-10-17Handle diagrams with a single pointMarc Glisse
2020-10-17Don't put a (useless) point on the diagonal in the exampleMarc Glisse
2020-10-16Merge pull request #396 from VincentRouvreau/tensorflow_wasserstein_testVincent Rouvreau
Added tests for wasserstein distance with tensorflow
2020-10-05code review: move test_wasserstein_distance_grad from ↵ROUVREAU Vincent
test_wasserstein_distance.py to test_wasserstein_with_tensors.py
2020-10-05Merge pull request #363 from VincentRouvreau/stree_reset_filtrationVincent Rouvreau
A proposal for simplex_tree reset_filtration (python & C++)
2020-09-29Added tests for wasserstein distance with tensorflowROUVREAU Vincent
2020-09-28doc review: improve reset_filtration documentationROUVREAU Vincent
2020-09-28code review: Let the exception propagateROUVREAU Vincent
2020-09-08CMake > 3.5 to use Boost targets. Compile only what is available from boost ↵ROUVREAU Vincent
targets
2020-08-25Merge pull request #382 from yuichi-ike/weighted_ripsVincent Rouvreau
Documents for weighted Rips
2020-08-25Code review: min_dim = 0 as default and some doc reviewROUVREAU Vincent
2020-08-24code review: call boundary_simplex_range only onceROUVREAU Vincent
2020-08-21Add link to cubical notebookROUVREAU Vincent
2020-08-21Add barycenter notebook linkROUVREAU Vincent
2020-08-21Add link to extended persistence notebookROUVREAU Vincent
2020-08-21Move examples and link to notebookROUVREAU Vincent
2020-08-21Add -DCMAKE_BUILD_TYPE=Release on installation docROUVREAU Vincent
2020-08-19docs modifiedyuichi-ike
2020-08-18reset_filtration from a dimension (instead of 'until')ROUVREAU Vincent
2020-08-18Merge master and resolve conflictsROUVREAU Vincent
2020-08-18Merge master & resolve conflictsROUVREAU Vincent
2020-08-12code review: boundaries uses only once find and return a pair of iterator. ↵ROUVREAU Vincent
Exception is raised when not found. tested
2020-08-12code review: Add test to get boundaries from a vertexROUVREAU Vincent
2020-08-12Update src/python/gudhi/simplex_tree.pyxVincent Rouvreau
Co-authored-by: Marc Glisse <marc.glisse@inria.fr>
2020-08-04Fix python alpha complex for conda packageROUVREAU Vincent
2020-08-04Remove JAX from the documentationMarc Glisse
jax.grad does not work with our functions (I think it used to work...)
2020-08-04fix wasserstein autodiffMathieuCarriere
2020-08-03Merge pull request #368 from VincentRouvreau/matplotlib_latex_desactivationVincent Rouvreau
Add mechanism to deactivate LaTeX matplotlib rendering
2020-08-03doc review: Add LaTeX in optional runtime dependenciesROUVREAU Vincent
2020-08-03Merge pull request #369 from VincentRouvreau/collapse_edges_stree_pythonVincent Rouvreau
collapse edges for python simplex tree
2020-08-03doc review: specify the error and indicate what to install on UbuntuROUVREAU Vincent
2020-08-03code review: no need to test if pointer is NULLROUVREAU Vincent
2020-08-03code review: simplify edge parsingROUVREAU Vincent
2020-07-31code review: collapse edges should copy the 0-skeleton. A test was addedROUVREAU Vincent
2020-07-31code review: no need to use any other temporary vectorROUVREAU Vincent
2020-07-31code review: remove initialize_filtrationROUVREAU Vincent
2020-07-31code review: using a vector is overkill. emplace_back is more efficientROUVREAU Vincent
2020-07-31Rebuild example page and link to example. Add also a link to the ↵ROUVREAU Vincent
publication. Doc review: document edge collapse ignores simplices of higher dimension.
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